Factsheet for Bra010408.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026361.1-P	Field mustard	cytosol, nucleus, plastid	57.68	60.43
Bra019058.1-P	Field mustard	cytosol	44.81	52.68
Bra002986.1-P	Field mustard	cytosol	38.17	50.55
AT4G27310.1	Thale cress	cytosol, nucleus, plastid	46.06	49.78
Bra022722.1-P	Field mustard	cytosol, nucleus, plastid	41.08	49.25
GSMUA_Achr3P22980_001	Banana	cytosol, nucleus, plastid	36.51	42.31
GSMUA_Achr8P07440_001	Banana	nucleus	29.05	37.43
Bra039558.1-P	Field mustard	cytosol	12.45	30.93
Zm00001d024213_P001	Maize	nucleus	33.2	30.77
EES14650	Sorghum	nucleus	33.61	29.89
Zm00001d049464_P001	Maize	nucleus	32.37	29.89
Os08t0178800-01	Rice	nucleus	34.44	29.54
VIT_19s0014g03960.t01	Wine grape	nucleus	35.27	28.52
GSMUA_Achr11P...	Banana	nucleus	25.73	27.93
Bra023857.1-P	Field mustard	cytosol	13.69	26.83
GSMUA_Achr5P26340_001	Banana	nucleus	37.76	25.35
Bra031255.1-P	Field mustard	cytosol	16.6	18.1
Bra001815.1-P	Field mustard	cytosol	16.18	16.96

Protein Annotations

EnsemblPlants:Bra010408.1	EnsemblPlants:Bra010408.1-P	EnsemblPlantsGene:Bra010408	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:Znf_B-box	PANTHER:PTHR31717
PANTHER:PTHR31717:SF26	PFAM:PF00643	SEG:seg	SMART:SM00336	UniParc:UPI0002545699	UniProt:M4D1Q8
MapMan:35.2	:	:	:	:	:

Description

AT4G27310 (E=1e-043) | zinc finger (B-box type) family protein

Coordinates

chrA08:-:14384514..14385321

Molecular Weight (calculated)

25722.2 Da

IEP (calculated)

4.167

GRAVY (calculated)

-0.638

Length

241 amino acids

Sequence
(BLAST)

001: MGKKKCDLCD GVARMYCESD QASLCWNCDG KVHGANFLVA KHARCLLCTS CQSLTPWKAT GLRLGPTFSV CESCVALKSA AAGGGGVRFV SDDRSQEING
101: SEHEVDSAES YDDDEDEDED EEYSSEDEDV EEEEAENQVV PWSAEAAAQL PPMMSSSSSS DGGDLVGKRG RDCSDDEIGS SSSAQELNYS PPLKRPSREG
201: PASKSTAAIN SLTRLEGEGT LNGAVDSSLV AISRTRRDLS R

Best Arabidopsis Sequence Match ( AT4G27310.1 )
(BLAST)

001: MGKKCDLCNG VARMYCESDQ ASLCWDCDGK VHGANFLVAK HTRCLLCSAC QSLTPWKATG LRLGPTFSVC ESCVALKNAG GGRGNRVLSE NRGQEEVNSF
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV

Arabidopsis Description

BBX28 [Source:UniProtKB/TrEMBL;Acc:A0A178V4D3]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.