Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G27310.1 | Thale cress | cytosol, nucleus, plastid | 58.54 | 53.81 |
| Bra022722.1-P | Field mustard | cytosol, nucleus, plastid | 49.76 | 50.75 |
| Bra026361.1-P | Field mustard | cytosol, nucleus, plastid | 56.59 | 50.43 |
| Bra002986.1-P | Field mustard | cytosol | 44.39 | 50.0 |
| Bra010408.1-P | Field mustard | cytosol, nucleus, plastid | 52.68 | 44.81 |
| GSMUA_Achr3P22980_001 | Banana | cytosol, nucleus, plastid | 39.02 | 38.46 |
| GSMUA_Achr8P07440_001 | Banana | nucleus | 29.76 | 32.62 |
| Zm00001d024213_P001 | Maize | nucleus | 38.05 | 30.0 |
| EES14650 | Sorghum | nucleus | 39.51 | 29.89 |
| Zm00001d049464_P001 | Maize | nucleus | 37.56 | 29.5 |
| Bra039558.1-P | Field mustard | cytosol | 13.17 | 27.84 |
| Os08t0178800-01 | Rice | nucleus | 38.05 | 27.76 |
| GSMUA_Achr11P... | Banana | nucleus | 29.76 | 27.48 |
| VIT_19s0014g03960.t01 | Wine grape | nucleus | 39.02 | 26.85 |
| Bra023857.1-P | Field mustard | cytosol | 15.61 | 26.02 |
| GSMUA_Achr5P26340_001 | Banana | nucleus | 40.49 | 23.12 |
| Bra001815.1-P | Field mustard | cytosol | 21.46 | 19.13 |
| Bra031255.1-P | Field mustard | cytosol | 19.51 | 18.1 |
Protein Annotations
| EnsemblPlants:Bra019058.1 | EnsemblPlants:Bra019058.1-P | EnsemblPlantsGene:Bra019058 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31717 |
| PANTHER:PTHR31717:SF26 | SEG:seg | SMART:SM00336 | UniParc:UPI0002540B21 | UniProt:M4DRB5 | MapMan:35.2 |
Description
AT4G27310 (E=6e-046) | zinc finger (B-box type) family protein
Coordinates
chrA03:+:26524769..26525470
Molecular Weight (calculated)
22140.9 Da
IEP (calculated)
4.014
GRAVY (calculated)
-0.874
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKCDLCEG VARMHCESDQ ASLCWDCDGK VHGANFLVAK HTRCLLCSAC QSPTPWKAAG LRLGPTFSVC DSCVALKSAA GGRDGVSSTE RILTENPGEE
101: INGFDNDDGD GAESYDDDED EDEDEEYSDE DEDENEDEEA ENQVVPWAAA QPPLVMSSSS SDGGCGGPVA KRTRDCSDEE IGCSSAEESN CSRPLKRPSR
201: EERRR
101: INGFDNDDGD GAESYDDDED EDEDEEYSDE DEDENEDEEA ENQVVPWAAA QPPLVMSSSS SDGGCGGPVA KRTRDCSDEE IGCSSAEESN CSRPLKRPSR
201: EERRR
001: MGKKCDLCNG VARMYCESDQ ASLCWDCDGK VHGANFLVAK HTRCLLCSAC QSLTPWKATG LRLGPTFSVC ESCVALKNAG GGRGNRVLSE NRGQEEVNSF
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
Arabidopsis Description
BBX28 [Source:UniProtKB/TrEMBL;Acc:A0A178V4D3]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.