CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25450	Soybean	cytosol, nucleus, plastid	83.05	84.97
KRH21598	Soybean	cytosol, nucleus, plastid	37.29	42.86
KRH10724	Soybean	cytosol, nucleus, plastid	35.03	40.79
KRH26865	Soybean	nucleus	47.46	38.01
KRH22488	Soybean	nucleus	46.89	37.56
PGSC0003DMT400057529	Potato	nucleus	40.11	37.37
Solyc02g079430.2.1	Tomato	nucleus	38.42	36.76
GSMUA_Achr8P07440_001	Banana	nucleus	38.42	36.36
Solyc12g005660.1.1	Tomato	cytosol, nucleus, plastid	40.11	35.15
GSMUA_Achr3P22980_001	Banana	cytosol, nucleus, plastid	41.24	35.1
PGSC0003DMT400035751	Potato	cytosol, nucleus, plastid	40.11	34.47
KRH55436	Soybean	nucleus	36.72	30.09
Solyc07g053140.2.1	Tomato	cytosol, nucleus, plastid	41.81	28.79
PGSC0003DMT400067337	Potato	nucleus	40.11	27.63
Zm00001d049464_P001	Maize	nucleus	38.98	26.44
VIT_12s0134g00400.t01	Wine grape	nucleus	44.63	26.42
GSMUA_Achr11P...	Banana	nucleus	31.64	25.23
KRH26836	Soybean	cytosol, nucleus, plastid	17.51	25.0
Zm00001d024213_P001	Maize	nucleus	36.72	25.0
EES14650	Sorghum	nucleus	37.29	24.35
KRH22520	Soybean	cytosol, nucleus, plastid	16.95	24.19
Os08t0178800-01	Rice	nucleus	36.72	23.13
GSMUA_Achr5P26340_001	Banana	nucleus	44.63	22.01
KRH44613	Soybean	nucleus	24.29	17.84
KRH47291	Soybean	nucleus	24.29	17.7

Protein Annotations

EMBL:ACUP02004092	EnsemblPlants:KRH56068	EnsemblPlantsGene:GLYMA_06G300900	EntrezGene:100782655	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:Znf_B-box
PANTHER:PTHR31717	PANTHER:PTHR31717:SF26	PFAM:PF00643	PFscan:PS50119	ProteinID:KRH56068	ProteinID:KRH56068.1
SEG:seg	SMART:SM00336	UniParc:UPI000233A60B	UniProt:I1KF89	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr6:-:48975351..48976477

Molecular Weight (calculated)

19200.5 Da

IEP (calculated)

4.112

GRAVY (calculated)

-0.886

Length

177 amino acids

Sequence
(BLAST)

001: MNKCELCKVP ARIFCESDQA SLCWDCDAKV HSANFLVARH ARTLLCRTCR SPTPWKASGA SLASAVSVCD RCAASEEPEE SEAGNDDEPD TEDDDNDDED
101: GDNQVVPWSS SPPPPPPSSS SGSEWSECKN DDASISASEQ ETTTCSLKRQ REDDDDASSD RDPRVLRRVG RLNGGCV

Best Arabidopsis Sequence Match ( AT5G54470.1 )
(BLAST)

001: MGKKKCELCC GVARMYCESD QASLCWDCDG KVHGANFLVA KHMRCLLCSA CQSHTPWKAS GLNLGPTVSI CESCLARKKN NNSSLAGRDQ NLNQEEEIIG
101: CNDGAESYDE ESDEDEEEEE VENQVVPAAV EQELPVVSSS SSVSSGEGDQ VVKRTRLDLD LNLSDEENQS RPLKRLSRDE GLSRSTVVMN SSIVKLHGGR
201: RKAEGCDTSS SSSFY

Arabidopsis Description

BBX29 [Source:UniProtKB/TrEMBL;Acc:A0A178UJV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.