Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69474 | Canola | nucleus, plastid | 42.05 | 38.54 |
| Bra001043.1-P | Field mustard | nucleus | 47.73 | 18.42 |
| GSMUA_Achr3P28130_001 | Banana | nucleus | 53.41 | 16.79 |
| GSMUA_Achr9P22690_001 | Banana | nucleus, plastid | 54.55 | 16.49 |
| GSMUA_Achr2P04960_001 | Banana | nucleus | 48.86 | 15.99 |
| GSMUA_Achr7P16370_001 | Banana | nucleus | 46.59 | 14.04 |
| GSMUA_Achr9P19630_001 | Banana | nucleus | 50.0 | 13.21 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.73 | 13.17 |
| Bra021464.1-P | Field mustard | nucleus | 47.73 | 13.08 |
| GSMUA_Achr10P... | Banana | nucleus | 46.59 | 12.85 |
| GSMUA_Achr1P23420_001 | Banana | nucleus | 48.86 | 12.84 |
| KRH45169 | Soybean | nucleus | 50.0 | 12.64 |
| AT3G02380.1 | Thale cress | nucleus | 48.86 | 12.39 |
| Bra023541.1-P | Field mustard | nucleus | 44.32 | 12.38 |
| KRH01455 | Soybean | nucleus | 48.86 | 12.22 |
| KRH18308 | Soybean | nucleus | 48.86 | 11.91 |
| GSMUA_Achr11P... | Banana | nucleus | 46.59 | 11.78 |
| KRG93763 | Soybean | nucleus | 48.86 | 11.75 |
| Bra008668.1-P | Field mustard | nucleus | 44.32 | 11.57 |
| VIT_14s0083g00640.t01 | Wine grape | nucleus | 51.14 | 11.51 |
| AT5G15850.1 | Thale cress | nucleus | 45.45 | 11.27 |
| Solyc02g089540.2.1 | Tomato | nucleus | 50.0 | 11.25 |
| Bra008669.1-P | Field mustard | nucleus | 46.59 | 11.2 |
| AT5G15840.1 | Thale cress | nucleus | 46.59 | 10.99 |
| PGSC0003DMT400026068 | Potato | nucleus | 50.0 | 10.86 |
| Solyc02g089520.1.1 | Tomato | nucleus | 50.0 | 10.76 |
| PGSC0003DMT400026065 | Potato | nucleus | 48.86 | 10.41 |
| GSMUA_Achr9P12860_001 | Banana | nucleus | 32.95 | 6.95 |
| GSMUA_Achr7P20150_001 | Banana | nucleus | 31.82 | 6.8 |
| GSMUA_Achr3P04260_001 | Banana | nucleus | 31.82 | 6.67 |
| GSMUA_Achr5P22460_001 | Banana | nucleus | 29.55 | 6.65 |
| GSMUA_Achr5P04270_001 | Banana | nucleus | 31.82 | 6.64 |
| GSMUA_Achr10P... | Banana | nucleus | 29.55 | 6.48 |
| GSMUA_Achr3P08880_001 | Banana | nucleus | 28.41 | 6.13 |
| GSMUA_Achr10P... | Banana | nucleus | 27.27 | 5.24 |
| GSMUA_Achr6P06130_001 | Banana | nucleus | 25.0 | 4.94 |
| Solyc02g089500.2.1 | Tomato | nucleus | 5.68 | 3.52 |
| GSMUA_Achr11P... | Banana | nucleus | 20.45 | 3.47 |
| GSMUA_Achr6P13590_001 | Banana | cytosol, mitochondrion, nucleus | 0.0 | 0.0 |
| HORVU0Hr1G022380.1 | Barley | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:35.1 | InterPro:CCT_domain | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSMUA_Achr4G18680_001 | EnsemblPlants:GSMUA_Achr4P18680_001 | EnsemblPlants:GSMUA_Achr4T18680_001 |
| InterPro:IPR010402 | UniProt:M0SQ31 | PFAM:PF06203 | PFscan:PS51017 | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF39 |
| UniParc:UPI0002961A49 | SEG:seg | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G18680_001]
Coordinates
chr4:+:19680733..19680999
Molecular Weight (calculated)
10542.2 Da
IEP (calculated)
11.177
GRAVY (calculated)
-0.613
Length
88 amino acids
Sequence
(BLAST)
(BLAST)
1: MDREARVTRY REKSKTRKFE KTMRYASRKA YAKTKPRIKG RFAKKSNAEL EVEELLLLIS GSNKMQSLII YVMIIFVARW EQKLLKKI
001: MGFGLESIKS ISGGWGAAAR SCDACKSVTA AVFCRVDSAF LCIACDTRIH SFTRHERVWV CEVCEQAPAA VTCKADAAAL CVSCDADIHS ANPLASRHER
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF
Arabidopsis Description
COL5Zinc finger protein CONSTANS-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHH8]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.