Factsheet for GSMUA_Achr2P04960_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P18680_001	Banana	nucleus	15.99	48.86
GSMUA_Achr9P19630_001	Banana	nucleus	57.99	46.85
GSMUA_Achr1P23420_001	Banana	nucleus	55.39	44.48
GSMUA_Achr7P16370_001	Banana	nucleus	47.96	44.18
GSMUA_AchrUn_...	Banana	nucleus	50.56	42.63
GSMUA_Achr10P...	Banana	nucleus	48.7	41.07
GSMUA_Achr11P...	Banana	nucleus	52.42	40.52
GSMUA_Achr3P28130_001	Banana	nucleus	37.55	36.07
GSMUA_Achr9P22690_001	Banana	nucleus, plastid	36.06	33.33
GSMUA_Achr6P13590_001	Banana	cytosol, mitochondrion, nucleus	5.95	17.98
GSMUA_Achr5P22460_001	Banana	nucleus	23.79	16.37
GSMUA_Achr7P20150_001	Banana	nucleus	24.91	16.26
GSMUA_Achr3P04260_001	Banana	nucleus	25.28	16.19
GSMUA_Achr9P12860_001	Banana	nucleus	24.91	16.07
GSMUA_Achr10P...	Banana	nucleus	23.42	15.71
GSMUA_Achr5P04270_001	Banana	nucleus	24.16	15.4
GSMUA_Achr10P...	Banana	nucleus	24.54	14.41
GSMUA_Achr6P06130_001	Banana	nucleus	23.42	14.16
GSMUA_Achr3P08880_001	Banana	nucleus	18.96	12.5
GSMUA_Achr11P...	Banana	nucleus	22.68	11.78

Protein Annotations

MapMan:35.1	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	EnsemblPlantsGene:GSMUA_Achr2G04960_001	EnsemblPlants:GSMUA_Achr2P04960_001
EnsemblPlants:GSMUA_Achr2T04960_001	InterPro:IPR000315	InterPro:IPR010402	UniProt:M0S587	PFAM:PF00643	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF14	SMART:SM00336	UniParc:UPI000296D502
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

Putative Zinc finger protein CONSTANS-LIKE 5 [Source:GMGC_GENE;Acc:GSMUA_Achr2G04960_001]

Coordinates

chr2:+:10205178..10206435

Molecular Weight (calculated)

28638.8 Da

IEP (calculated)

7.502

GRAVY (calculated)

-0.312

Length

269 amino acids

Sequence
(BLAST)

001: MRVHGAEQLA SRHKHVWICE ACKQAPAAVI CKADAAALCD ACDADIHSAN PLACRHKRAP IAAPIKPSTA SAAFAFGAGA GDGVDEKEEN DAEEATAASW
101: ILPNSGHAQF KGLIEAPLLK SMEYYSSVGS YLDLDGAPPI SSFLPPDAGA ELDFVPTKPC HTIHSMSQSM PPSEVGVVPD ESGGAGNAAA QMDREARVMR
201: YREKRKNRRF EKTIRYASRK ANAETRPRIK GRFAKRASIE AEVDRIYSSA SAAPAALMAD AGFGVVPSF

Best Arabidopsis Sequence Match ( AT2G24790.1 )
(BLAST)

001: MASSSRLCDS CKSTAATLFC RADAAFLCGD CDGKIHTANK LASRHERVWL CEVCEQAPAH VTCKADAAAL CVTCDRDIHS ANPLSRRHER VPITPFYDAV
101: GPAKSASSSV NFVDEDGGDV TASWLLAKEG IEITNLFSDL DYPKIEVTSE ENSSGNDGVV PVQNKLFLNE DYFNFDLSAS KISQQGFNFI NQTVSTRTID
201: VPLVPESGGV TAEMTNTETP AVQLSPAERE ARVLRYREKR KNRKFEKTIR YASRKAYAEM RPRIKGRFAK RTDSRENDGG DVGVYGGFGV VPSF

Arabidopsis Description

COL3Zinc finger protein CONSTANS-LIKE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK53]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.