Factsheet for GSMUA_Achr3P08880_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P13590_001	Banana	cytosol, mitochondrion, nucleus	8.58	39.33
KRH68113	Soybean	nucleus	30.15	35.24
KRG96381	Soybean	nucleus	30.15	35.04
AT2G47890.1	Thale cress	nucleus	27.94	34.34
KRH71535	Soybean	nucleus	28.43	34.12
KRH31920	Soybean	nucleus	28.92	33.91
CDY53026	Canola	nucleus	27.45	33.53
CDX80141	Canola	nucleus	27.21	33.43
Bra004423.1-P	Field mustard	nucleus	27.21	33.23
VIT_07s0104g01360.t01	Wine grape	nucleus	31.86	32.99
PGSC0003DMT400029591	Potato	nucleus	30.64	32.98
Solyc09g074560.2.1	Tomato	nucleus	30.15	32.98
GSMUA_Achr4P18680_001	Banana	nucleus	6.13	28.41
GSMUA_Achr7P16370_001	Banana	nucleus	18.63	26.03
GSMUA_Achr10P...	Banana	nucleus	19.12	24.45
GSMUA_Achr6P06130_001	Banana	nucleus	25.0	22.92
GSMUA_Achr10P...	Banana	nucleus	24.51	21.83
GSMUA_Achr3P04260_001	Banana	nucleus	21.81	21.19
GSMUA_Achr9P19630_001	Banana	nucleus	17.16	21.02
GSMUA_Achr7P20150_001	Banana	nucleus	21.08	20.87
GSMUA_AchrUn_...	Banana	nucleus	16.18	20.69
GSMUA_Achr9P12860_001	Banana	nucleus	21.08	20.62
GSMUA_Achr11P...	Banana	nucleus	17.4	20.4
GSMUA_Achr10P...	Banana	nucleus	19.85	20.2
GSMUA_Achr1P23420_001	Banana	nucleus	16.42	20.0
GSMUA_Achr5P22460_001	Banana	nucleus	18.87	19.69
GSMUA_Achr5P04270_001	Banana	nucleus	20.34	19.67
GSMUA_Achr11P...	Banana	nucleus	24.51	19.3
GSMUA_Achr2P04960_001	Banana	nucleus	12.5	18.96
GSMUA_Achr3P28130_001	Banana	nucleus	12.25	17.86
GSMUA_Achr9P22690_001	Banana	nucleus, plastid	11.76	16.49

Protein Annotations

MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr3G08880_001
EnsemblPlants:GSMUA_Achr3P08880_001	EnsemblPlants:GSMUA_Achr3T08880_001	InterPro:IPR000315	InterPro:IPR010402	UniProt:M0SD05	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF16	SMART:SM00336	UniParc:UPI0002968958
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

Putative Zinc finger protein CONSTANS-LIKE 13 [Source:GMGC_GENE;Acc:GSMUA_Achr3G08880_001]

Coordinates

chr3:-:6413343..6417380

Molecular Weight (calculated)

44456.0 Da

IEP (calculated)

6.275

GRAVY (calculated)

-0.563

Length

408 amino acids

Sequence
(BLAST)

001: MGQEGEATAP VVAVVEEEEI GRGRGGGGGG GERGGTGEES CDYCGAARAL LWCRADAARL CLACDRHVHA ANSVSSRHRR ALLCDACRSE PSAIHCSSCR
101: ALLCANCDFD AHGRAGLLHD RRPVEGFSGC PSAGKLVSAL GVGGDEKEVL EGEADDVGDY LVEDGSVWEA QPVLSFEDFI VPTTASHGFQ AMGMPPLPKH
201: RNSTCGKHKE EIIQQIRDLI KLESGTNDYH EVVAPIMESY GWVSEQNIQI DYLGPASNNS WNVGPASNNS WNVTTPHEDI TLEGNQIDCR EANTTIGLLN
301: PPGEYPRTSS AVNLSSLNKA AEANACKSHG NDTNTDHVEF VPQDEMQHLP LKGIYKLARA DRNSVILRYQ EKRKTRKYNK LIRYESRKIR ADSRLRIKGR
401: FAKTNPSQ

Best Arabidopsis Sequence Match ( AT2G47890.1 )
(BLAST)

001: MEAEEGHQRD RLCDYCDSSV ALVYCKADSA KLCLACDKQV HVANQLFAKH FRSLLCDSCN ESPSSLFCET ERSVLCQNCD WQHHTASSSL HSRRPFEGFT
101: GCPSVPELLA IVGLDDLTLD SGLLWESPEI VSLNDLIVSG GSGTHNFRAT DVPPLPKNRH ATCGKYKDEM IRQLRGLSRS EPGCLKFETP DAEIDAGFQF
201: LAPDLFSTCE LESGLKWFDQ QDHEDFPYCS LLKNLSESDE KPENVDRESS VMVPVSGCLN RCEEETVMVP VITSTRSMTH EINSLERNSA LSRYKEKKKS
301: RRYEKHIRYE SRKVRAESRT RIRGRFAKAA DP

Arabidopsis Description

COL13Zinc finger protein CONSTANS-LIKE 13 [Source:UniProtKB/Swiss-Prot;Acc:O82256]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.