Factsheet for GSMUA_Achr3P04260_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr2P18060_001
GSMUA_Achr4P19000_001
GSMUA_Achr5P14120_001
GSMUA_Achr8P14660_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48250.1	GSMUA_Achr11P...	AT1G32230.1	19548978
AT5G48250.1	GSMUA_Achr2P18060_001	AT1G32230.1	19548978
AT5G48250.1	GSMUA_Achr4P19000_001	AT1G32230.1	19548978
AT5G48250.1	GSMUA_Achr5P14120_001	AT1G32230.1	19548978
AT5G48250.1	GSMUA_Achr8P14660_001	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P12860_001	Banana	nucleus	75.95	76.5
GSMUA_Achr5P04270_001	Banana	nucleus	75.48	75.12
GSMUA_Achr7P20150_001	Banana	nucleus	65.95	67.23
GSMUA_Achr10P...	Banana	nucleus	61.19	64.09
GSMUA_Achr5P22460_001	Banana	nucleus	57.14	61.38
VIT_12s0057g01350.t01	Wine grape	nucleus	59.29	60.0
KRG89998	Soybean	nucleus	58.33	59.9
VIT_00s0194g00070.t01	Wine grape	nucleus	58.81	59.66
KRH16989	Soybean	nucleus	57.38	58.64
KRH72628	Soybean	nucleus	56.43	58.52
KRH17709	Soybean	nucleus	56.67	58.19
Bra001264.1-P	Field mustard	nucleus	46.19	55.27
AT3G07650.1	Thale cress	nucleus	47.86	54.03
CDY07979	Canola	nucleus	45.24	53.98
CDY35952	Canola	nucleus	47.38	53.93
CDY28029	Canola	nucleus	47.38	53.49
CDX85321	Canola	nucleus	45.71	53.48
CDX86318	Canola	nucleus	45.24	53.07
Bra040020.1-P	Field mustard	nucleus	46.19	53.01
CDY48743	Canola	nucleus	44.05	52.86
CDY22125	Canola	nucleus	45.95	52.73
AT5G48250.1	Thale cress	nucleus	46.67	52.55
Bra020709.1-P	Field mustard	nucleus	43.81	52.42
PGSC0003DMT400013624	Potato	nucleus	51.43	52.3
Bra037499.1-P	Field mustard	nucleus	42.86	52.17
CDY05691	Canola	nucleus	43.1	52.16
PGSC0003DMT400044878	Potato	nucleus	50.24	51.34
Bra029666.1-P	Field mustard	nucleus	47.14	51.3
Solyc05g020020.2.1	Tomato	nucleus	50.0	51.22
PGSC0003DMT400074143	Potato	nucleus	49.29	50.74
GSMUA_Achr6P13590_001	Banana	cytosol, mitochondrion, nucleus	10.71	50.56
CDX74034	Canola	nucleus	46.43	50.0
Solyc07g045180.2.1	Tomato	nucleus	49.52	49.76
Solyc12g006240.1.1	Tomato	nucleus	29.29	45.72
GSMUA_Achr4P18680_001	Banana	nucleus	6.67	31.82
GSMUA_Achr7P16370_001	Banana	nucleus	19.29	27.74
GSMUA_Achr10P...	Banana	nucleus	20.24	26.65
GSMUA_Achr2P04960_001	Banana	nucleus	16.19	25.28
GSMUA_Achr1P23420_001	Banana	nucleus	19.52	24.48
GSMUA_Achr9P19630_001	Banana	nucleus	19.29	24.32
GSMUA_AchrUn_...	Banana	nucleus	17.86	23.51
GSMUA_Achr11P...	Banana	nucleus	18.81	22.7
GSMUA_Achr3P08880_001	Banana	nucleus	21.19	21.81
GSMUA_Achr6P06130_001	Banana	nucleus	23.1	21.8
GSMUA_Achr3P28130_001	Banana	nucleus	14.52	21.79
GSMUA_Achr9P22690_001	Banana	nucleus, plastid	15.0	21.65
GSMUA_Achr10P...	Banana	nucleus	23.1	21.18
GSMUA_Achr11P...	Banana	nucleus	23.1	18.73

Protein Annotations

MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	EnsemblPlantsGene:GSMUA_Achr3G04260_001	EnsemblPlants:GSMUA_Achr3P04260_001
EnsemblPlants:GSMUA_Achr3T04260_001	InterPro:IPR000315	InterPro:IPR010402	UniProt:M0SBP4	PFAM:PF00643	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF39	SMART:SM00336	UniParc:UPI0002947F98
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

Putative Zinc finger protein CONSTANS-LIKE 9 [Source:GMGC_GENE;Acc:GSMUA_Achr3G04260_001]

Coordinates

chr3:+:2716580..2721249

Molecular Weight (calculated)

45282.9 Da

IEP (calculated)

4.970

GRAVY (calculated)

-0.330

Length

420 amino acids

Sequence
(BLAST)

001: MSHLCDFCGE QRSIVYCRSD AASLCLSCDR NVHSANALSQ RHSRTLLCDR CSAQPAVIRC TEESVSLCQN CDWNGHGGSA VSSGHKRETI NCYIGCPSAA
101: EFSRIWSFFQ ELPQIAESNC EQGLGLMTIN ESSVSNCWAS PENSTLDVSG GGKMEELGAV DKSSALIGSS SGSAMCPMPC TADLTAGAVD LTTPKLSCPG
201: TKDFEFCKDD IYEDLNMDDV DLTFQNYEEL FGVSHNETGH LFDDDEIDIF FDTRATSAGN SNSQGELVGE ASSAGQVKPM QAMFSNAVSA DSVMSKPVKN
301: ADSSQFFPAR QACFSLSLSF SGLTGESSAG DYQDCGVSSV LLMGAPPVFG AGLENSSLPR GSRVSAVMRY KEKKKARKFE KKIRYASRKA MADVRKRVKG
401: RFVKAGEAYD YDPLAQTRSC

Best Arabidopsis Sequence Match ( AT3G07650.3 )
(BLAST)

001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY

Arabidopsis Description

COL9AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.