Factsheet for GSMUA_Achr9P12860_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr2P18060_001
GSMUA_Achr4P19000_001
GSMUA_Achr5P14120_001
GSMUA_Achr8P14660_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48250.1	GSMUA_Achr11P...	AT1G32230.1	19548978
AT5G48250.1	GSMUA_Achr2P18060_001	AT1G32230.1	19548978
AT5G48250.1	GSMUA_Achr4P19000_001	AT1G32230.1	19548978
AT5G48250.1	GSMUA_Achr5P14120_001	AT1G32230.1	19548978
AT5G48250.1	GSMUA_Achr8P14660_001	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P04260_001	Banana	nucleus	76.5	75.95
GSMUA_Achr5P04270_001	Banana	nucleus	73.62	72.75
GSMUA_Achr7P20150_001	Banana	nucleus	65.95	66.75
GSMUA_Achr10P...	Banana	nucleus	60.67	63.09
GSMUA_Achr5P22460_001	Banana	nucleus	56.83	60.61
VIT_12s0057g01350.t01	Wine grape	nucleus	58.75	59.04
VIT_00s0194g00070.t01	Wine grape	nucleus	57.55	57.97
KRG89998	Soybean	nucleus	56.83	57.95
KRH72628	Soybean	nucleus	55.64	57.28
KRH17709	Soybean	nucleus	55.88	56.97
KRH16989	Soybean	nucleus	55.88	56.69
CDY35952	Canola	nucleus	47.0	53.12
GSMUA_Achr6P13590_001	Banana	cytosol, mitochondrion, nucleus	11.27	52.81
Bra001264.1-P	Field mustard	nucleus	44.36	52.71
AT3G07650.1	Thale cress	nucleus	47.0	52.69
CDY28029	Canola	nucleus	46.76	52.42
CDY07979	Canola	nucleus	43.88	51.99
CDY22125	Canola	nucleus	45.32	51.64
Bra040020.1-P	Field mustard	nucleus	45.32	51.64
Bra029666.1-P	Field mustard	nucleus	47.0	50.78
CDX85321	Canola	nucleus	43.65	50.7
PGSC0003DMT400013624	Potato	nucleus	49.88	50.36
CDX86318	Canola	nucleus	43.17	50.28
Solyc05g020020.2.1	Tomato	nucleus	49.16	50.0
PGSC0003DMT400044878	Potato	nucleus	49.16	49.88
AT5G48250.1	Thale cress	nucleus	44.6	49.87
PGSC0003DMT400074143	Potato	nucleus	48.44	49.51
CDY48743	Canola	nucleus	41.49	49.43
Bra020709.1-P	Field mustard	nucleus	41.49	49.29
Bra037499.1-P	Field mustard	nucleus	40.77	49.28
CDY05691	Canola	nucleus	40.77	48.99
Solyc07g045180.2.1	Tomato	nucleus	48.44	48.33
CDX74034	Canola	nucleus	45.08	48.21
Solyc12g006240.1.1	Tomato	nucleus	27.82	43.12
GSMUA_Achr4P18680_001	Banana	nucleus	6.95	32.95
GSMUA_Achr7P16370_001	Banana	nucleus	19.9	28.42
GSMUA_Achr10P...	Banana	nucleus	20.38	26.65
GSMUA_Achr2P04960_001	Banana	nucleus	16.07	24.91
GSMUA_Achr1P23420_001	Banana	nucleus	19.42	24.18
GSMUA_AchrUn_...	Banana	nucleus	18.23	23.82
GSMUA_Achr9P19630_001	Banana	nucleus	18.94	23.72
GSMUA_Achr11P...	Banana	nucleus	18.7	22.41
GSMUA_Achr3P08880_001	Banana	nucleus	20.62	21.08
GSMUA_Achr3P28130_001	Banana	nucleus	14.15	21.07
GSMUA_Achr6P06130_001	Banana	nucleus	22.3	20.9
GSMUA_Achr10P...	Banana	nucleus	22.78	20.74
GSMUA_Achr9P22690_001	Banana	nucleus, plastid	14.15	20.27
GSMUA_Achr11P...	Banana	nucleus	21.82	17.57

Protein Annotations

MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	EnsemblPlantsGene:GSMUA_Achr9G12860_001	EnsemblPlants:GSMUA_Achr9P12860_001
EnsemblPlants:GSMUA_Achr9T12860_001	InterPro:IPR000315	InterPro:IPR010402	UniProt:M0TZU4	PFAM:PF06203	PFscan:PS50119
PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF39	SMART:SM00336	UniParc:UPI0002961307	InterPro:Znf_B-box
SEG:seg	:	:	:	:	:

Description

Putative Zinc finger protein CONSTANS-LIKE 9 [Source:GMGC_GENE;Acc:GSMUA_Achr9G12860_001]

Coordinates

chr9:+:8333343..8337854

Molecular Weight (calculated)

45375.0 Da

IEP (calculated)

4.968

GRAVY (calculated)

-0.384

Length

417 amino acids

Sequence
(BLAST)

001: MSHLCDFCGE QRSVIYCRSD AAALCLSCDR IVHSANALSR RHSRTLLCDS CSTQPAFVRC IEESVSLCQN CDWNKDGGSA VAKGHKRETI NCYIGCPSAA
101: ELSRMWPFFK EFPPIEDADC EQGLGLMTID ENSVTNCWGH PQNSISGAGK LNNPGAFDKF DSLIGSSSGP AICSMPCTAD LVAGSVDSTT PKLSCPGTND
201: SELCKDGLCD DFNLDDVDLT FQNYEELFGL SHNQTGHLFD DHGIDVIFDP WDTCAANSNC QDEFVGEASS EGQVKPLPTT CSNAVSADSV MSNPGQNVDS
301: SMFFPARQAH SCLSFSFSGL TGESSARDYQ DCGVSSMLLM GEPPVFPAGP ESSMLPTASR DSAVMRYKEK KKTRKFEKKI RYASRKAMAE VRRRVKGRFV
401: KAGEAYDYDP LAKTRSC

Best Arabidopsis Sequence Match ( AT3G07650.3 )
(BLAST)

001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY

Arabidopsis Description

COL9AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.