Factsheet for GSMUA_Achr10P23700_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P16370_001	Banana	nucleus	75.24	82.19
Zm00001d025770_P001	Maize	nucleus	54.55	53.87
Zm00001d003162_P001	Maize	nucleus	53.92	53.75
TraesCS2A01G353900.1	Wheat	nucleus	52.98	53.48
TraesCS6D01G202000.1	Wheat	nucleus	52.66	53.0
TraesCS2D01G351900.1	Wheat	nucleus	52.66	52.66
TraesCS2B01G372000.1	Wheat	nucleus	52.66	52.66
TraesCS6A01G218900.1	Wheat	nucleus	52.66	52.34
TraesCS6B01G248400.1	Wheat	nucleus	52.66	52.34
EES12446	Sorghum	nucleus	53.92	52.28
GSMUA_Achr9P19630_001	Banana	nucleus	54.55	52.25
HORVU6Hr1G056000.2	Barley	nucleus	51.72	51.89
Os04t0497700-01	Rice	nucleus	52.66	50.45
GSMUA_Achr1P23420_001	Banana	nucleus	52.35	49.85
GSMUA_AchrUn_...	Banana	nucleus	49.84	49.84
Os02t0610500-01	Rice	nucleus	51.1	49.1
Zm00001d051047_P001	Maize	nucleus	48.28	49.04
GSMUA_Achr2P04960_001	Banana	nucleus	41.07	48.7
EES05406	Sorghum	nucleus	50.47	47.92
Zm00001d017176_P001	Maize	nucleus	50.16	47.76
GSMUA_Achr4P18680_001	Banana	nucleus	12.85	46.59
GSMUA_Achr11P...	Banana	nucleus	50.16	45.98
GSMUA_Achr3P28130_001	Banana	nucleus	34.8	39.64
GSMUA_Achr9P22690_001	Banana	nucleus, plastid	33.23	36.43
GSMUA_Achr6P13590_001	Banana	cytosol, mitochondrion, nucleus	9.4	33.71
GSMUA_Achr10P...	Banana	nucleus	26.65	21.2
GSMUA_Achr5P22460_001	Banana	nucleus	25.39	20.72
GSMUA_Achr7P20150_001	Banana	nucleus	26.33	20.39
GSMUA_Achr9P12860_001	Banana	nucleus	26.65	20.38
GSMUA_Achr3P04260_001	Banana	nucleus	26.65	20.24
GSMUA_Achr5P04270_001	Banana	nucleus	25.71	19.43
GSMUA_Achr3P08880_001	Banana	nucleus	24.45	19.12
GSMUA_Achr10P...	Banana	nucleus	26.33	18.34
GSMUA_Achr6P06130_001	Banana	nucleus	24.76	17.75
GSMUA_Achr11P...	Banana	nucleus	24.14	14.86

Protein Annotations

MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	EnsemblPlantsGene:GSMUA_Achr10G23700_001	EnsemblPlants:GSMUA_Achr10P23700_001
EnsemblPlants:GSMUA_Achr10T23700_001	InterPro:IPR000315	InterPro:IPR010402	UniProt:M0RKU5	PFAM:PF00643	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF21	SMART:SM00336	UniParc:UPI00029682C0
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

Putative Zinc finger protein CONSTANS-LIKE 3 [Source:GMGC_GENE;Acc:GSMUA_Achr10G23700_001]

Coordinates

chr10:+:28305407..28306745

Molecular Weight (calculated)

34554.7 Da

IEP (calculated)

5.892

GRAVY (calculated)

-0.297

Length

319 amino acids

Sequence
(BLAST)

001: MKREEVEEKK GGAYLSVASK PCDSCRVSAA LLYCRADVAY LCRGCDARVH GANGLASRHE RAWLCEVCEH VPAVVTCKAD AAALCADCDA DIHSANPLAR
101: RHERIPLLPF LGPAPKPPAT GRVGSGDDEE TDAEAASSLL PQEGPVLRSA AEFFFSDADA YLDLDYGSSM DEMKTVVGAD QPFFLAPGGD YFDLNIAGCK
201: QEADHSLCHS VFSTPSIHAA VVPDVSQPSA VGMPCDPAAA RLDREARLMR YREKRKSRRF EKTIRYASRK AYAEARPRIK GRFAKRTEVE AEVGRIYSSA
301: ADAVAALMAD DDYGVVPSF

Best Arabidopsis Sequence Match ( AT2G24790.1 )
(BLAST)

001: MASSSRLCDS CKSTAATLFC RADAAFLCGD CDGKIHTANK LASRHERVWL CEVCEQAPAH VTCKADAAAL CVTCDRDIHS ANPLSRRHER VPITPFYDAV
101: GPAKSASSSV NFVDEDGGDV TASWLLAKEG IEITNLFSDL DYPKIEVTSE ENSSGNDGVV PVQNKLFLNE DYFNFDLSAS KISQQGFNFI NQTVSTRTID
201: VPLVPESGGV TAEMTNTETP AVQLSPAERE ARVLRYREKR KNRKFEKTIR YASRKAYAEM RPRIKGRFAK RTDSRENDGG DVGVYGGFGV VPSF

Arabidopsis Description

COL3Zinc finger protein CONSTANS-LIKE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK53]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.