Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G202000.1 | Wheat | nucleus | 93.71 | 94.01 |
| TraesCS6A01G218900.1 | Wheat | nucleus | 94.65 | 93.77 |
| TraesCS6B01G248400.1 | Wheat | nucleus | 94.34 | 93.46 |
| Os02t0610500-01 | Rice | nucleus | 77.99 | 74.7 |
| EES05406 | Sorghum | nucleus | 73.9 | 69.94 |
| Zm00001d051047_P001 | Maize | nucleus | 67.92 | 68.79 |
| Zm00001d017176_P001 | Maize | nucleus | 72.33 | 68.66 |
| GSMUA_Achr7P16370_001 | Banana | nucleus | 49.06 | 53.42 |
| GSMUA_Achr10P... | Banana | nucleus | 51.89 | 51.72 |
| HORVU7Hr1G027560.1 | Barley | nucleus | 31.13 | 40.08 |
| HORVU0Hr1G022380.1 | Barley | cytosol | 21.38 | 23.94 |
| HORVU6Hr1G071950.2 | Barley | nucleus | 26.1 | 21.73 |
| HORVU4Hr1G048700.1 | Barley | nucleus, plastid | 21.38 | 14.59 |
| HORVU2Hr1G020760.2 | Barley | cytosol, mitochondrion | 12.58 | 10.08 |
| HORVU0Hr1G021050.5 | Barley | cytosol | 10.69 | 8.04 |
Protein Annotations
| MapMan:15.5.1.2 | UniProt:A0A287U939 | InterPro:CCT_domain | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008270 | EnsemblPlantsGene:HORVU6Hr1G056000 |
| EnsemblPlants:HORVU6Hr1G056000.2 | InterPro:IPR000315 | InterPro:IPR010402 | PFAM:PF00643 | PFAM:PF06203 | PFscan:PS50119 |
| PFscan:PS51017 | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF21 | SMART:SM00336 | UniParc:UPI000B483C12 | InterPro:Znf_B-box |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:357491041..357492205
Molecular Weight (calculated)
33282.6 Da
IEP (calculated)
5.079
GRAVY (calculated)
-0.292
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: VVGGGGAGQG GAGFWGLAGR PCDTCAVDAA RLYCRLDGAY LCAGCDARAH GAGSRHARVW LCEVCEHAPA AVTCRADAAA LCATCDADIH SANPLASRHE
101: RLPITPFFGA LADPPQPVPS PSSAAATQED AEDDGSNEAE AASWLLPEPG DSPEDSAATF FADSDAYLDL DFVRSMDGIK AIGVPVAPSE LDLAGGTLFY
201: PEHSMNHSMS TSEVAVVPDA LSAGGAPAPA PSVAVVASKG KEREARLMRY REKRKNRRFQ KTIRYASRKA YAETRPRIKG RFAKRTAEDD ALEQDGPFSP
301: ASSAHLASDG DYGVVPSF
101: RLPITPFFGA LADPPQPVPS PSSAAATQED AEDDGSNEAE AASWLLPEPG DSPEDSAATF FADSDAYLDL DFVRSMDGIK AIGVPVAPSE LDLAGGTLFY
201: PEHSMNHSMS TSEVAVVPDA LSAGGAPAPA PSVAVVASKG KEREARLMRY REKRKNRRFQ KTIRYASRKA YAETRPRIKG RFAKRTAEDD ALEQDGPFSP
301: ASSAHLASDG DYGVVPSF
001: MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSS
101: DGSVKHTAVN FLDDCYFSDI DGNGSREEEE EEAASWLLLP NPKTTTTATA GIVAVTSAEE VPGDSPEMNT GQQYLFSDPD PYLDLDYGNV DPKVESLEQN
201: SSGTDGVVPV ENRTVRIPTV NENCFEMDFT GGSKGFTYGG GYNCISHSVS SSSMEVGVVP DGGSVADVSY PYGGPATSGA DPGTQRAVPL TSAEREARVM
301: RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NESNDVVGHG GIFSGFGLVP TF
101: DGSVKHTAVN FLDDCYFSDI DGNGSREEEE EEAASWLLLP NPKTTTTATA GIVAVTSAEE VPGDSPEMNT GQQYLFSDPD PYLDLDYGNV DPKVESLEQN
201: SSGTDGVVPV ENRTVRIPTV NENCFEMDFT GGSKGFTYGG GYNCISHSVS SSSMEVGVVP DGGSVADVSY PYGGPATSGA DPGTQRAVPL TSAEREARVM
301: RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NESNDVVGHG GIFSGFGLVP TF
Arabidopsis Description
COL4Zinc finger protein CONSTANS-LIKE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q940T9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.