Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU0Hr1G014460.1 | |
| HORVU1Hr1G050960.7 | |
| HORVU5Hr1G124010.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G48250.1 | HORVU0Hr1G014460.1 | AT1G32230.1 | 19548978 |
| AT5G48250.1 | HORVU1Hr1G050960.7 | AT1G32230.1 | 19548978 |
| AT5G48250.1 | HORVU5Hr1G124010.1 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G315400.1 | Wheat | nucleus | 94.76 | 92.82 |
| TraesCS6A01G286400.3 | Wheat | nucleus | 90.05 | 88.21 |
| TraesCS6D01G267100.1 | Wheat | nucleus | 90.31 | 88.01 |
| Os02t0724000-01 | Rice | nucleus | 77.75 | 72.97 |
| EES07342 | Sorghum | nucleus | 73.56 | 69.21 |
| Zm00001d051684_P007 | Maize | nucleus | 71.47 | 67.24 |
| GSMUA_Achr7P20150_001 | Banana | nucleus | 59.42 | 55.1 |
| Zm00001d017885_P001 | Maize | nucleus | 66.23 | 54.88 |
| GSMUA_Achr10P... | Banana | nucleus | 56.28 | 53.62 |
| VIT_12s0057g01350.t01 | Wine grape | nucleus | 56.28 | 51.81 |
| VIT_00s0194g00070.t01 | Wine grape | nucleus | 56.02 | 51.69 |
| Bra001264.1-P | Field mustard | nucleus | 47.38 | 51.57 |
| CDY07979 | Canola | nucleus | 47.38 | 51.42 |
| CDY35952 | Canola | nucleus | 49.48 | 51.22 |
| AT3G07650.1 | Thale cress | nucleus | 49.48 | 50.81 |
| Bra040020.1-P | Field mustard | nucleus | 48.43 | 50.55 |
| CDY28029 | Canola | nucleus | 49.21 | 50.54 |
| CDY22125 | Canola | nucleus | 47.91 | 50.0 |
| KRG89998 | Soybean | nucleus | 53.4 | 49.88 |
| CDX85321 | Canola | nucleus | 46.86 | 49.86 |
| KRH17709 | Soybean | nucleus | 52.88 | 49.39 |
| KRH72628 | Soybean | nucleus | 52.36 | 49.38 |
| AT5G48250.1 | Thale cress | nucleus | 48.17 | 49.33 |
| CDX86318 | Canola | nucleus | 46.07 | 49.16 |
| CDY48743 | Canola | nucleus | 45.03 | 49.14 |
| Bra029666.1-P | Field mustard | nucleus | 49.48 | 48.96 |
| Bra020709.1-P | Field mustard | nucleus | 44.76 | 48.72 |
| KRH16989 | Soybean | nucleus | 52.09 | 48.42 |
| Bra037499.1-P | Field mustard | nucleus | 43.46 | 48.12 |
| GSMUA_Achr5P22460_001 | Banana | nucleus | 49.21 | 48.08 |
| CDY05691 | Canola | nucleus | 43.19 | 47.55 |
| PGSC0003DMT400074143 | Potato | nucleus | 50.0 | 46.81 |
| CDX74034 | Canola | nucleus | 47.64 | 46.67 |
| PGSC0003DMT400013624 | Potato | nucleus | 50.26 | 46.49 |
| Solyc05g020020.2.1 | Tomato | nucleus | 48.95 | 45.61 |
| PGSC0003DMT400044878 | Potato | nucleus | 47.38 | 44.04 |
| Solyc07g045180.2.1 | Tomato | nucleus | 48.17 | 44.02 |
| Solyc12g006240.1.1 | Tomato | nucleus | 30.1 | 42.75 |
| HORVU6Hr1G056000.2 | Barley | nucleus | 21.73 | 26.1 |
| HORVU7Hr1G027560.1 | Barley | nucleus | 14.14 | 21.86 |
| HORVU4Hr1G048700.1 | Barley | nucleus, plastid | 21.2 | 17.38 |
| HORVU0Hr1G021050.5 | Barley | cytosol | 14.4 | 13.0 |
| HORVU0Hr1G022380.1 | Barley | cytosol | 7.59 | 10.21 |
| HORVU2Hr1G020760.2 | Barley | cytosol, mitochondrion | 10.21 | 9.82 |
Protein Annotations
| MapMan:15.5.1.2 | InterPro:CCT_domain | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008270 | EnsemblPlantsGene:HORVU6Hr1G071950 | EnsemblPlants:HORVU6Hr1G071950.2 |
| InterPro:IPR000315 | InterPro:IPR010402 | UniProt:M0WFC0 | PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 |
| PANTHER:PTHR31717 | PANTHER:PTHR31717:SF6 | SMART:SM00336 | UniParc:UPI000296D323 | InterPro:Znf_B-box | SEG:seg |
Description
No Description!
Coordinates
chrchr6H:-:499992165..499995664
Molecular Weight (calculated)
41760.6 Da
IEP (calculated)
5.143
GRAVY (calculated)
-0.535
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MGALCDFCGE QRPTIYCRSD AASLCLSCDR NVHSANSLSR RHMRTLLCDR CASQPAAVRC LEENISLCQN CDWNGHGATS LAAGHLRQTI NCYSGCPSSE
101: ELARIWSFDF DAPSAAAEPN CEEGISMMSI NDSGVSNHCH DQQDSSLLDI ANTSLISDPH TGEKLKSSGE MNLRPLPTHQ PAQSVSMAPK VPCVTDDDMF
201: NDGSIYENFC VDDAGLTFEN YEELFGTPHI QTEQLFDDAG IDSYFGMKEM PAADCNEQLK PMQPECSNAV SADSSLCVPA RQAISSISLS FSGFTGEGNA
301: GDHQDCGVSP WLHPGPEGSS ASGSRGSALS RYMEKKKRRK FDKKIRYASR KARADVRKRV KGRFVKAGEA YDYDPLCDTR SY
101: ELARIWSFDF DAPSAAAEPN CEEGISMMSI NDSGVSNHCH DQQDSSLLDI ANTSLISDPH TGEKLKSSGE MNLRPLPTHQ PAQSVSMAPK VPCVTDDDMF
201: NDGSIYENFC VDDAGLTFEN YEELFGTPHI QTEQLFDDAG IDSYFGMKEM PAADCNEQLK PMQPECSNAV SADSSLCVPA RQAISSISLS FSGFTGEGNA
301: GDHQDCGVSP WLHPGPEGSS ASGSRGSALS RYMEKKKRRK FDKKIRYASR KARADVRKRV KGRFVKAGEA YDYDPLCDTR SY
001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY
Arabidopsis Description
COL9AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.