Factsheet for HORVU4Hr1G048700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G140600.1	Wheat	nucleus	77.68	87.86
TraesCS4D01G167300.1	Wheat	nucleus	71.67	84.13
TraesCS4B01G155800.1	Wheat	nucleus	71.24	83.63
Os03t0351100-01	Rice	nucleus	56.87	65.76
Zm00001d029149_P001	Maize	nucleus	53.0	62.22
EER94860	Sorghum	nucleus	54.72	61.74
GSMUA_Achr6P13590_001	Banana	cytosol, mitochondrion, nucleus	6.87	35.96
AT2G47890.1	Thale cress	nucleus	23.18	32.53
KRH68113	Soybean	nucleus	24.03	32.09
VIT_07s0104g01360.t01	Wine grape	nucleus	27.04	31.98
KRG96381	Soybean	nucleus	24.03	31.91
KRH31920	Soybean	nucleus	23.61	31.61
KRH71535	Soybean	nucleus	22.75	31.18
Solyc09g074560.2.1	Tomato	nucleus	24.46	30.56
PGSC0003DMT400029591	Potato	nucleus	24.68	30.34
CDY53026	Canola	nucleus	20.82	29.04
Bra004423.1-P	Field mustard	nucleus	20.6	28.74
CDX80141	Canola	nucleus	20.39	28.61
HORVU2Hr1G020760.2	Barley	cytosol, mitochondrion	21.89	25.69
HORVU6Hr1G056000.2	Barley	nucleus	14.59	21.38
HORVU6Hr1G071950.2	Barley	nucleus	17.38	21.2
HORVU7Hr1G027560.1	Barley	nucleus	9.44	17.81
HORVU0Hr1G021050.5	Barley	cytosol	12.45	13.71
HORVU0Hr1G022380.1	Barley	cytosol	4.72	7.75

Protein Annotations

MapMan:15.5.1.2	UniProt:A0A287NYI9	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	EnsemblPlantsGene:HORVU4Hr1G048700
EnsemblPlants:HORVU4Hr1G048700.1	InterPro:IPR000315	InterPro:IPR010402	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017
PANTHER:PTHR31717	PANTHER:PTHR31717:SF10	SMART:SM00336	UniParc:UPI000B486874	InterPro:Znf_B-box	SEG:seg

Description

No Description!

Coordinates

chrchr4H:+:393764378..393774911

Molecular Weight (calculated)

50980.5 Da

IEP (calculated)

6.591

GRAVY (calculated)

-0.602

Length

466 amino acids

Sequence
(BLAST)

001: SIPFPFPQSM EPWRSRSCPA RRRDETAAPT PGPRAASRTP DPATSPASEL TVIHRNIGAS YASSSAYFLP ATIPSFPPVT IPLHHMGQDE RQDPELPVMD
101: KELSGDAVTC DYCSGPQAVV YCRADSARLC LPCDRHVHAA NAVCSRHLRA PLCAACRATG AVFRHGGPEF LCSNCDFARS RDGELPLHDR CTVQGYTGRP
201: SAHELAALLG VPDLDKPSAA KADDGWWAIW EEPHVFSLED LIVPTTSCHG FQPLVTPLSP KIHNSSPNGK TNDEVIRQLH ELAEVDMGGG QITPREEAEQ
301: AAHQLPSWTQ PHYTAGNGDF GTDNSHEVAT MPTPGYENGG WNNSNHHALN DACKAEYEQE QAPASSAEAC LSSFVQMPEL CPSMSNGSMM DDSQQANPGI
401: GMPMQAFPKR SGFDVVAGPD RDIVISRYKE KRRTRRFDKQ VRYESRKARA DSRLRIKGRF AKANQS

Best Arabidopsis Sequence Match ( AT2G47890.1 )
(BLAST)

001: MEAEEGHQRD RLCDYCDSSV ALVYCKADSA KLCLACDKQV HVANQLFAKH FRSLLCDSCN ESPSSLFCET ERSVLCQNCD WQHHTASSSL HSRRPFEGFT
101: GCPSVPELLA IVGLDDLTLD SGLLWESPEI VSLNDLIVSG GSGTHNFRAT DVPPLPKNRH ATCGKYKDEM IRQLRGLSRS EPGCLKFETP DAEIDAGFQF
201: LAPDLFSTCE LESGLKWFDQ QDHEDFPYCS LLKNLSESDE KPENVDRESS VMVPVSGCLN RCEEETVMVP VITSTRSMTH EINSLERNSA LSRYKEKKKS
301: RRYEKHIRYE SRKVRAESRT RIRGRFAKAA DP

Arabidopsis Description

COL13Zinc finger protein CONSTANS-LIKE 13 [Source:UniProtKB/Swiss-Prot;Acc:O82256]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.