Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400029591 | Potato | nucleus | 92.76 | 91.29 |
| KRG96381 | Soybean | nucleus | 52.55 | 55.84 |
| KRH68113 | Soybean | nucleus | 52.01 | 55.59 |
| VIT_07s0104g01360.t01 | Wine grape | nucleus | 54.42 | 51.52 |
| CDX80141 | Canola | nucleus | 43.16 | 48.49 |
| Bra004423.1-P | Field mustard | nucleus | 43.16 | 48.2 |
| AT2G47890.1 | Thale cress | nucleus | 42.63 | 47.89 |
| CDY53026 | Canola | nucleus | 42.63 | 47.6 |
| KRH31920 | Soybean | nucleus | 42.63 | 45.69 |
| KRH71535 | Soybean | nucleus | 40.75 | 44.71 |
| GSMUA_Achr6P13590_001 | Banana | cytosol, mitochondrion, nucleus | 7.77 | 32.58 |
| Os07t0667300-01 | Rice | nucleus | 31.64 | 31.05 |
| Solyc02g089500.2.1 | Tomato | nucleus | 11.53 | 30.28 |
| GSMUA_Achr3P08880_001 | Banana | nucleus | 32.98 | 30.15 |
| TraesCS2A01G119600.1 | Wheat | nucleus | 30.56 | 29.84 |
| TraesCS2D01G121400.1 | Wheat | nucleus | 30.29 | 29.66 |
| Os03t0351100-01 | Rice | nucleus | 31.64 | 29.28 |
| TraesCS2B01G140300.1 | Wheat | nucleus | 30.29 | 29.2 |
| EER99873 | Sorghum | nucleus | 32.17 | 29.06 |
| TraesCS4D01G167300.1 | Wheat | nucleus | 30.56 | 28.72 |
| TraesCS4B01G155800.1 | Wheat | nucleus | 30.56 | 28.72 |
| Zm00001d007107_P001 | Maize | nucleus | 31.37 | 28.61 |
| TraesCS4A01G140600.1 | Wheat | nucleus | 30.56 | 27.67 |
| Zm00001d029149_P001 | Maize | nucleus | 29.22 | 27.46 |
| EER94860 | Sorghum | nucleus | 30.03 | 27.12 |
| Solyc05g024010.2.1 | Tomato | nucleus | 31.1 | 25.66 |
| Zm00001d022500_P001 | Maize | nucleus | 12.06 | 24.86 |
| HORVU4Hr1G048700.1 | Barley | nucleus, plastid | 30.56 | 24.46 |
| Solyc12g096500.1.1 | Tomato | nucleus | 20.11 | 20.95 |
| Solyc08g006530.2.1 | Tomato | nucleus | 19.3 | 20.63 |
| Solyc07g045180.2.1 | Tomato | nucleus | 22.79 | 20.33 |
| Solyc05g020020.2.1 | Tomato | nucleus | 21.98 | 20.0 |
| Solyc05g046040.1.1 | Tomato | nucleus | 21.98 | 19.57 |
| Solyc02g089540.2.1 | Tomato | nucleus | 20.38 | 19.44 |
| Solyc12g006240.1.1 | Tomato | nucleus | 13.94 | 19.33 |
| Solyc02g089520.1.1 | Tomato | nucleus | 20.11 | 18.34 |
| HORVU2Hr1G020760.2 | Barley | cytosol, mitochondrion | 19.03 | 17.88 |
| Solyc07g006630.2.1 | Tomato | nucleus | 18.23 | 17.62 |
| Solyc04g007470.2.1 | Tomato | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 19.3 | 15.16 |
Protein Annotations
| MapMan:15.5.1.2 | InterPro:CCT_domain | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008270 |
| GO:GO:0043565 | GO:GO:0044212 | InterPro:IPR000315 | InterPro:IPR010402 | UniProt:K4CV33 | PFAM:PF00643 |
| PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31717 | PANTHER:PTHR31717:SF16 | SMART:SM00336 |
| EnsemblPlantsGene:Solyc09g074560.2 | EnsemblPlants:Solyc09g074560.2.1 | UniParc:UPI000276B589 | InterPro:Znf_B-box | SEG:seg | : |
Description
Zinc finger protein CONSTANS-LIKE 13 [Source:Projected from Arabidopsis thaliana (AT2G47890) UniProtKB/Swiss-Prot;Acc:O82256]
Coordinates
chr9:-:66374429..66376717
Molecular Weight (calculated)
42229.2 Da
IEP (calculated)
6.159
GRAVY (calculated)
-0.765
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEVKKDEEN HHQHLCDFCG NNTALLYCRA DSAKLCFTCD REVHSTNQLF TKHTRWLLCN LCDSSPASIL CCTETSVLCQ NCDWESHNKL LSLHERRPLE
101: GFTGCPSVSE LLSILGFEDL GKKELLCGGD DGAYGFSDWV IWDAPSVVTL DDLIANNNES RHNYQAIGVP PLPKNRNAAC GKHKEEILGQ LRELSKLEPN
201: SGDDQDENVP TTGFQSMEPV QNCPLRYKGS GFMQRSDQHV VPSSEGSAFH WHGDTGEFVD QGFSSSLTDC FIETKCLLPD RDSDVCDASG GGNEEQSHHP
301: TTTETFQMVP KVVHRELNSQ ERETAVSRYK EKKKTRRYEK HIRYESRKAR AETRTRIKGR FAKMDYRDSS VHQ
101: GFTGCPSVSE LLSILGFEDL GKKELLCGGD DGAYGFSDWV IWDAPSVVTL DDLIANNNES RHNYQAIGVP PLPKNRNAAC GKHKEEILGQ LRELSKLEPN
201: SGDDQDENVP TTGFQSMEPV QNCPLRYKGS GFMQRSDQHV VPSSEGSAFH WHGDTGEFVD QGFSSSLTDC FIETKCLLPD RDSDVCDASG GGNEEQSHHP
301: TTTETFQMVP KVVHRELNSQ ERETAVSRYK EKKKTRRYEK HIRYESRKAR AETRTRIKGR FAKMDYRDSS VHQ
001: MEAEEGHQRD RLCDYCDSSV ALVYCKADSA KLCLACDKQV HVANQLFAKH FRSLLCDSCN ESPSSLFCET ERSVLCQNCD WQHHTASSSL HSRRPFEGFT
101: GCPSVPELLA IVGLDDLTLD SGLLWESPEI VSLNDLIVSG GSGTHNFRAT DVPPLPKNRH ATCGKYKDEM IRQLRGLSRS EPGCLKFETP DAEIDAGFQF
201: LAPDLFSTCE LESGLKWFDQ QDHEDFPYCS LLKNLSESDE KPENVDRESS VMVPVSGCLN RCEEETVMVP VITSTRSMTH EINSLERNSA LSRYKEKKKS
301: RRYEKHIRYE SRKVRAESRT RIRGRFAKAA DP
101: GCPSVPELLA IVGLDDLTLD SGLLWESPEI VSLNDLIVSG GSGTHNFRAT DVPPLPKNRH ATCGKYKDEM IRQLRGLSRS EPGCLKFETP DAEIDAGFQF
201: LAPDLFSTCE LESGLKWFDQ QDHEDFPYCS LLKNLSESDE KPENVDRESS VMVPVSGCLN RCEEETVMVP VITSTRSMTH EINSLERNSA LSRYKEKKKS
301: RRYEKHIRYE SRKVRAESRT RIRGRFAKAA DP
Arabidopsis Description
COL13Zinc finger protein CONSTANS-LIKE 13 [Source:UniProtKB/Swiss-Prot;Acc:O82256]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.