Factsheet for TraesCS4D01G167300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G155800.1	Wheat	nucleus	95.97	95.97
TraesCS4A01G140600.1	Wheat	nucleus	86.4	83.25
HORVU4Hr1G048700.1	Barley	nucleus, plastid	84.13	71.67
Os03t0351100-01	Rice	nucleus	65.24	64.27
EER94860	Sorghum	nucleus	62.97	60.53
Zm00001d029149_P001	Maize	nucleus	60.45	60.45
TraesCS2D01G121400.1	Wheat	nucleus	43.07	44.88
GSMUA_Achr6P13590_001	Banana	cytosol, mitochondrion, nucleus	7.81	34.83
KRH68113	Soybean	nucleus	28.72	32.66
KRG96381	Soybean	nucleus	28.46	32.19
AT2G47890.1	Thale cress	nucleus	26.45	31.63
KRH31920	Soybean	nucleus	27.46	31.32
KRH71535	Soybean	nucleus	26.7	31.18
VIT_07s0104g01360.t01	Wine grape	nucleus	30.73	30.96
Solyc09g074560.2.1	Tomato	nucleus	28.72	30.56
PGSC0003DMT400029591	Potato	nucleus	28.97	30.34
CDY53026	Canola	nucleus	24.69	29.34
Bra004423.1-P	Field mustard	nucleus	24.43	29.04
CDX80141	Canola	nucleus	24.18	28.92
TraesCS6D01G202000.1	Wheat	nucleus	17.88	22.4
TraesCS2D01G351900.1	Wheat	nucleus	17.38	21.63
TraesCS7D01G264300.1	Wheat	nucleus	26.45	21.47
TraesCS7D01G220300.1	Wheat	nucleus	20.65	20.71
TraesCS6D01G267100.1	Wheat	nucleus	19.9	20.15
TraesCS7D01G213000.2	Wheat	nucleus	16.37	16.97
TraesCS6D01G269500.1	Wheat	nucleus	15.62	16.8
TraesCS7D01G131700.1	Wheat	nucleus	10.58	16.8
TraesCS6D01G140900.1	Wheat	mitochondrion	15.37	16.76
TraesCS7D01G484400.1	Wheat	nucleus	14.61	15.59
TraesCS5D01G170700.1	Wheat	nucleus	12.09	14.77

Protein Annotations

EnsemblPlants:TraesCS4D01G167300.1	EnsemblPlantsGene:TraesCS4D01G167300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:CCT_domain	InterPro:IPR000315	InterPro:IPR010402
InterPro:Znf_B-box	PANTHER:PTHR31717	PANTHER:PTHR31717:SF10	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017
SEG:seg	SMART:SM00336	TIGR:cd00021	MapMan:15.5.1.2	:	:

Description

No Description!

Coordinates

chr4D:+:288428792..288432381

Molecular Weight (calculated)

43456.8 Da

IEP (calculated)

6.546

GRAVY (calculated)

-0.576

Length

397 amino acids

Sequence
(BLAST)

001: MEKELSADAV ACDHCSGPQA VVYCRADSAR LCLPCDRHVH AANAVCSRHL RAPLCAACRA TGAVFRHAGP EFLCSNCDFG RSRDAELPLH DRCTVQGYTG
101: RPSAHDLAAL LGVPDFDKPS AGKADDGWWA IWEEPQVFSL EDLIVPTTSS HGFQPLVTPS SPKVHDMLAV CQNSPVFCSC SEFSHLALTH LQKIHNSPDG
201: KTNDEVIRQL RELAEVDMGG GQITPREEAE QAAHLLPSRT ESQHTTGNGD FGTDNSHEVA TMPTPSYENG GWNNNDYHAL NGACKTEHEQ EQAPASSAEA
301: CLSSFVQMSE LCPSMSNGSM MDDGQQANPG TGMPMQAFPK RSGFDVVAGP DRDIVISRYK EKRRTRRFDK QVRYESRKAR ADSRLRIKGR FAKAKQS

Best Arabidopsis Sequence Match ( AT2G47890.1 )
(BLAST)

001: MEAEEGHQRD RLCDYCDSSV ALVYCKADSA KLCLACDKQV HVANQLFAKH FRSLLCDSCN ESPSSLFCET ERSVLCQNCD WQHHTASSSL HSRRPFEGFT
101: GCPSVPELLA IVGLDDLTLD SGLLWESPEI VSLNDLIVSG GSGTHNFRAT DVPPLPKNRH ATCGKYKDEM IRQLRGLSRS EPGCLKFETP DAEIDAGFQF
201: LAPDLFSTCE LESGLKWFDQ QDHEDFPYCS LLKNLSESDE KPENVDRESS VMVPVSGCLN RCEEETVMVP VITSTRSMTH EINSLERNSA LSRYKEKKKS
301: RRYEKHIRYE SRKVRAESRT RIRGRFAKAA DP

Arabidopsis Description

COL13Zinc finger protein CONSTANS-LIKE 13 [Source:UniProtKB/Swiss-Prot;Acc:O82256]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.