Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G032800.1 | Wheat | nucleus | 90.8 | 93.42 |
| TraesCS7A01G132100.1 | Wheat | nucleus | 90.4 | 90.76 |
| HORVU7Hr1G027560.1 | Barley | nucleus | 88.4 | 89.47 |
| Zm00001d024200_P001 | Maize | nucleus | 66.0 | 59.35 |
| EES14798 | Sorghum | nucleus | 68.4 | 58.56 |
| Zm00001d049347_P001 | Maize | nucleus | 63.6 | 56.99 |
| Os08t0249000-01 | Rice | nucleus | 35.6 | 49.44 |
| TraesCS6D01G202000.1 | Wheat | nucleus | 38.8 | 30.6 |
| TraesCS5D01G170700.1 | Wheat | nucleus | 36.8 | 28.31 |
| TraesCS2D01G351900.1 | Wheat | nucleus | 35.2 | 27.59 |
| TraesCS7D01G484400.1 | Wheat | nucleus | 35.6 | 23.92 |
| TraesCS6D01G140900.1 | Wheat | mitochondrion | 34.0 | 23.35 |
| TraesCS6D01G269500.1 | Wheat | nucleus | 33.6 | 22.76 |
| TraesCS7D01G213000.2 | Wheat | nucleus | 32.8 | 21.41 |
| TraesCS6D01G267100.1 | Wheat | nucleus | 21.6 | 13.78 |
| TraesCS2D01G121400.1 | Wheat | nucleus | 19.2 | 12.6 |
| TraesCS7D01G220300.1 | Wheat | nucleus | 19.6 | 12.37 |
| TraesCS4D01G167300.1 | Wheat | nucleus | 16.8 | 10.58 |
| TraesCS7D01G264300.1 | Wheat | nucleus | 19.2 | 9.82 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G131700.1 | EnsemblPlantsGene:TraesCS7D01G131700 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:CCT_domain | InterPro:IPR000315 | InterPro:IPR010402 |
| InterPro:Znf_B-box | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF35 | PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 |
| SEG:seg | SMART:SM00336 | TIGR:cd00021 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr7D:-:83472952..83474058
Molecular Weight (calculated)
25597.6 Da
IEP (calculated)
6.508
GRAVY (calculated)
-0.187
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MESEGSTSPN GGAACAVCGG AAALYCPADA AALCVPCDAA VHSANPLASR HERVPLAAAV AATSGVYDLF AADEEGGSSW PTPGQGSPNS GSSGFSNNGS
101: GIEMSLFDLL SDVDLVATGA GGTMLSDNGG VAPLWLQPGL AADGSAAWAS SWSPSEAVVV PSAADRAERV RRYREKRKNR KFHKTIRYAS RKAYAEARPR
201: IKGRFVKRPA AAADDGDNTS AGEAAAKFWL SFSDNSVGFQ VASHGVVPSF
101: GIEMSLFDLL SDVDLVATGA GGTMLSDNGG VAPLWLQPGL AADGSAAWAS SWSPSEAVVV PSAADRAERV RRYREKRKNR KFHKTIRYAS RKAYAEARPR
201: IKGRFVKRPA AAADDGDNTS AGEAAAKFWL SFSDNSVGFQ VASHGVVPSF
001: MASSSRLCDS CKSTAATLFC RADAAFLCGD CDGKIHTANK LASRHERVWL CEVCEQAPAH VTCKADAAAL CVTCDRDIHS ANPLSRRHER VPITPFYDAV
101: GPAKSASSSV NFVDEDGGDV TASWLLAKEG IEITNLFSDL DYPKIEVTSE ENSSGNDGVV PVQNKLFLNE DYFNFDLSAS KISQQGFNFI NQTVSTRTID
201: VPLVPESGGV TAEMTNTETP AVQLSPAERE ARVLRYREKR KNRKFEKTIR YASRKAYAEM RPRIKGRFAK RTDSRENDGG DVGVYGGFGV VPSF
101: GPAKSASSSV NFVDEDGGDV TASWLLAKEG IEITNLFSDL DYPKIEVTSE ENSSGNDGVV PVQNKLFLNE DYFNFDLSAS KISQQGFNFI NQTVSTRTID
201: VPLVPESGGV TAEMTNTETP AVQLSPAERE ARVLRYREKR KNRKFEKTIR YASRKAYAEM RPRIKGRFAK RTDSRENDGG DVGVYGGFGV VPSF
Arabidopsis Description
COL3Zinc finger protein CONSTANS-LIKE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK53]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.