Factsheet for TraesCS5D01G170700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G166100.1	Wheat	nucleus	98.15	97.85
TraesCS5B01G163500.1	Wheat	nucleus	97.54	97.54
Os09t0240200-01	Rice	nucleus	71.08	68.96
TraesCS7D01G131700.1	Wheat	nucleus	28.31	36.8
TraesCS6D01G202000.1	Wheat	nucleus	32.92	33.75
TraesCS2D01G351900.1	Wheat	nucleus	32.62	33.23
KRH52295	Soybean	nucleus, plastid	31.69	33.23
KRH61628	Soybean	nucleus, plastid	31.08	32.69
TraesCS6D01G140900.1	Wheat	mitochondrion	32.0	28.57
PGSC0003DMT400068637	Potato	nucleus	23.08	28.3
TraesCS7D01G213000.2	Wheat	nucleus	32.62	27.68
PGSC0003DMT400016342	Potato	nucleus	22.46	27.65
TraesCS6D01G269500.1	Wheat	nucleus	30.77	27.1
TraesCS7D01G484400.1	Wheat	nucleus	30.15	26.34
PGSC0003DMT400092769	Potato	nucleus	20.31	25.48
TraesCS6D01G267100.1	Wheat	nucleus	17.85	14.8
TraesCS7D01G220300.1	Wheat	nucleus	17.23	14.14
TraesCS2D01G121400.1	Wheat	nucleus	14.77	12.6
TraesCS7D01G264300.1	Wheat	nucleus	18.77	12.47
TraesCS4D01G167300.1	Wheat	nucleus	14.77	12.09

Protein Annotations

MapMan:35.1	InterPro:CCT_domain	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007275	GO:GO:0008150	GO:GO:0008270
GO:GO:0009628	GO:GO:0009791	GO:GO:0048577	InterPro:IPR000315	InterPro:IPR010402	PFAM:PF00643
PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF39	SMART:SM00336
EnsemblPlantsGene:TraesCS5D01G170700	EnsemblPlants:TraesCS5D01G170700.1	InterPro:Znf_B-box	TIGR:cd00021	SEG:seg	:

Description

No Description!

Coordinates

chr5D:-:267762748..267763978

Molecular Weight (calculated)

35521.3 Da

IEP (calculated)

6.319

GRAVY (calculated)

-0.621

Length

325 amino acids

Sequence
(BLAST)

001: MIKAEPELRG QLRGGGGMLQ QRCDSCRSAP CAFYCRADSA ALCAACDADV HSANTLASRH RRVPMGAVAP ASPAGGAFVV RPGGVNSSWP IREGRRSYYD
101: DGEGEEEEEE ATSWLLLDPL RGPEGDAPAF GDALVADFLD LGRAGEKDAS SKEYRGHGME SNEGSHELVV PGEPVAQLHE RQGFTAEMPY DAQNSNHGYG
201: FGATFQRSLS MSSSPDNSST VQDVTSSYMR RSESSVDLFS AAAHMSPQFM GMAMDREARV HRYREKRKMR RFEKTIRYAS RKAYAETRPR IKGRFAKRAD
301: ADLEVDQYFS AAALSDSSCG VVPTF

Best Arabidopsis Sequence Match ( AT3G02380.1 )
(BLAST)

001: MLKEESNESG TWARACDTCR SAACTVYCEA DSAYLCTTCD ARVHAANRVA SRHERVRVCQ SCESAPAAFL CKADAASLCT ACDAEIHSAN PLARRHQRVP
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF

Arabidopsis Description

COL2Zinc finger protein CONSTANS-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q96502]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.