Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G150900.2 | Wheat | mitochondrion | 95.6 | 95.34 |
| TraesCS6B01G179000.2 | Wheat | mitochondrion | 96.15 | 93.33 |
| TraesCS7D01G484400.1 | Wheat | nucleus | 56.87 | 55.65 |
| TraesCS6D01G202000.1 | Wheat | nucleus | 38.46 | 44.16 |
| TraesCS2D01G351900.1 | Wheat | nucleus | 38.19 | 43.57 |
| TraesCS7D01G131700.1 | Wheat | nucleus | 23.35 | 34.0 |
| TraesCS5D01G170700.1 | Wheat | nucleus | 28.57 | 32.0 |
| TraesCS6D01G269500.1 | Wheat | nucleus | 32.14 | 31.71 |
| TraesCS7D01G213000.2 | Wheat | nucleus | 30.77 | 29.24 |
| TraesCS6D01G267100.1 | Wheat | nucleus | 20.6 | 19.13 |
| TraesCS7D01G220300.1 | Wheat | nucleus | 18.13 | 16.67 |
| TraesCS2D01G121400.1 | Wheat | nucleus | 17.31 | 16.54 |
| TraesCS4D01G167300.1 | Wheat | nucleus | 16.76 | 15.37 |
| TraesCS7D01G264300.1 | Wheat | nucleus | 20.33 | 15.13 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G140900.1 | EnsemblPlantsGene:TraesCS6D01G140900 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:CCT_domain | InterPro:IPR000315 | InterPro:IPR010402 |
| InterPro:Znf_B-box | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF36 | PFAM:PF00643 | PFAM:PF06203 | PFscan:PS50119 |
| PFscan:PS51017 | SEG:seg | SMART:SM00336 | TIGR:cd00021 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr6D:-:110442834..110444841
Molecular Weight (calculated)
38021.4 Da
IEP (calculated)
5.882
GRAVY (calculated)
-0.267
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MELQGLGRYW GVGGRRCGSC RGSPAAVHCR TCDGGSGDGA YLCAGCDAGH ARAGHERVWV CEVCELAPAA VTCKADAAAL CAACDDDIHH ANPLARRHER
101: VPVQPIGSSS PEGQEPDAFV MSFGGAVDGE KQDPVVNLND ALEAGAGGKE NVKLDFLFAD MMDPFFGSEL PRFPHADSVV PSGGAVELDF GGVAAPAVVS
201: NPSYSSYTAA SLGGSQGSSS EVGLVPDAIC GRGGGIIELD FAQSKAAYLP YTPTPSHSTV SSVDVGSVPE RSDSPIAAAT PATGEGREAR LMRYREKRKN
301: RRFEKTIRYA SRKAYAESRP RVKGRFAKRA DDADADSNAV AVGTITTPRP CVLDFGSYGV VPTF
101: VPVQPIGSSS PEGQEPDAFV MSFGGAVDGE KQDPVVNLND ALEAGAGGKE NVKLDFLFAD MMDPFFGSEL PRFPHADSVV PSGGAVELDF GGVAAPAVVS
201: NPSYSSYTAA SLGGSQGSSS EVGLVPDAIC GRGGGIIELD FAQSKAAYLP YTPTPSHSTV SSVDVGSVPE RSDSPIAAAT PATGEGREAR LMRYREKRKN
301: RRFEKTIRYA SRKAYAESRP RVKGRFAKRA DDADADSNAV AVGTITTPRP CVLDFGSYGV VPTF
001: MASSSRLCDS CKSTAATLFC RADAAFLCGD CDGKIHTANK LASRHERVWL CEVCEQAPAH VTCKADAAAL CVTCDRDIHS ANPLSRRHER VPITPFYDAV
101: GPAKSASSSV NFVDEDGGDV TASWLLAKEG IEITNLFSDL DYPKIEVTSE ENSSGNDGVV PVQNKLFLNE DYFNFDLSAS KISQQGFNFI NQTVSTRTID
201: VPLVPESGGV TAEMTNTETP AVQLSPAERE ARVLRYREKR KNRKFEKTIR YASRKAYAEM RPRIKGRFAK RTDSRENDGG DVGVYGGFGV VPSF
101: GPAKSASSSV NFVDEDGGDV TASWLLAKEG IEITNLFSDL DYPKIEVTSE ENSSGNDGVV PVQNKLFLNE DYFNFDLSAS KISQQGFNFI NQTVSTRTID
201: VPLVPESGGV TAEMTNTETP AVQLSPAERE ARVLRYREKR KNRKFEKTIR YASRKAYAEM RPRIKGRFAK RTDSRENDGG DVGVYGGFGV VPSF
Arabidopsis Description
COL3Zinc finger protein CONSTANS-LIKE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK53]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.