Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc08g005270.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G48250.1 | Solyc08g005270.2.1 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400074143 | Potato | nucleus | 95.54 | 62.99 |
| Solyc07g045180.2.1 | Tomato | nucleus | 64.31 | 41.39 |
| Solyc05g020020.2.1 | Tomato | nucleus | 62.83 | 41.22 |
| KRH17709 | Soybean | nucleus | 56.51 | 37.16 |
| KRG89998 | Soybean | nucleus | 54.65 | 35.94 |
| TraesCS7B01G125500.1 | Wheat | cytosol, nucleus, plastid | 44.98 | 35.91 |
| KRH72628 | Soybean | nucleus | 53.9 | 35.8 |
| KRH16989 | Soybean | nucleus | 53.53 | 35.04 |
| CDY35952 | Canola | nucleus | 47.58 | 34.69 |
| AT3G07650.1 | Thale cress | nucleus | 47.58 | 34.41 |
| CDY22125 | Canola | nucleus | 46.47 | 34.15 |
| CDY28029 | Canola | nucleus | 47.21 | 34.14 |
| Bra040020.1-P | Field mustard | nucleus | 46.1 | 33.88 |
| VIT_12s0057g01350.t01 | Wine grape | nucleus | 51.67 | 33.49 |
| Bra029666.1-P | Field mustard | nucleus | 47.58 | 33.16 |
| CDY48743 | Canola | nucleus | 43.12 | 33.14 |
| CDY05691 | Canola | nucleus | 42.75 | 33.14 |
| VIT_00s0194g00070.t01 | Wine grape | nucleus | 50.93 | 33.09 |
| Bra001264.1-P | Field mustard | nucleus | 42.75 | 32.76 |
| Bra020709.1-P | Field mustard | nucleus | 42.38 | 32.48 |
| AT5G48250.1 | Thale cress | nucleus | 44.98 | 32.44 |
| CDY07979 | Canola | nucleus | 42.01 | 32.1 |
| CDX85321 | Canola | nucleus | 42.75 | 32.03 |
| CDX86318 | Canola | nucleus | 42.01 | 31.56 |
| TraesCS7A01G218600.1 | Wheat | nucleus | 44.98 | 30.56 |
| TraesCS7D01G220300.1 | Wheat | nucleus | 44.98 | 30.56 |
| HORVU6Hr1G071950.2 | Barley | nucleus | 42.75 | 30.1 |
| TraesCS6A01G286400.3 | Wheat | nucleus | 43.49 | 30.0 |
| GSMUA_Achr10P... | Banana | nucleus | 44.61 | 29.93 |
| Bra037499.1-P | Field mustard | nucleus | 38.29 | 29.86 |
| EES07342 | Sorghum | nucleus | 44.98 | 29.8 |
| CDX74034 | Canola | nucleus | 42.75 | 29.49 |
| TraesCS6B01G315400.1 | Wheat | nucleus | 42.75 | 29.49 |
| Os06t0298200-01 | Rice | nucleus | 44.61 | 29.41 |
| GSMUA_Achr7P20150_001 | Banana | nucleus | 44.98 | 29.37 |
| TraesCS6D01G267100.1 | Wheat | nucleus | 42.75 | 29.34 |
| Zm00001d051684_P007 | Maize | nucleus | 44.24 | 29.31 |
| GSMUA_Achr3P04260_001 | Banana | nucleus | 45.72 | 29.29 |
| KXG19836 | Sorghum | nucleus | 44.61 | 29.2 |
| Os02t0724000-01 | Rice | nucleus | 43.12 | 28.5 |
| GSMUA_Achr9P12860_001 | Banana | nucleus | 43.12 | 27.82 |
| Zm00001d045804_P003 | Maize | nucleus | 44.61 | 27.52 |
| GSMUA_Achr5P22460_001 | Banana | nucleus | 39.03 | 26.85 |
| GSMUA_Achr5P04270_001 | Banana | nucleus | 41.64 | 26.54 |
| Solyc02g089500.2.1 | Tomato | nucleus | 13.38 | 25.35 |
| Zm00001d017885_P001 | Maize | nucleus | 35.69 | 20.82 |
| Solyc05g046040.1.1 | Tomato | nucleus | 31.23 | 20.05 |
| Solyc04g007470.2.1 | Tomato | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 28.25 | 16.0 |
| Solyc09g074560.2.1 | Tomato | nucleus | 19.33 | 13.94 |
| Solyc08g006530.2.1 | Tomato | nucleus | 17.84 | 13.75 |
| Solyc12g096500.1.1 | Tomato | nucleus | 17.47 | 13.13 |
| Solyc05g024010.2.1 | Tomato | nucleus | 21.56 | 12.83 |
| Solyc02g089540.2.1 | Tomato | nucleus | 15.99 | 11.0 |
| Solyc02g089520.1.1 | Tomato | nucleus | 15.24 | 10.02 |
| Solyc07g006630.2.1 | Tomato | nucleus | 13.75 | 9.59 |
Protein Annotations
| EnsemblPlants:Solyc12g006240.1.1 | EnsemblPlantsGene:Solyc12g006240.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31717 | PANTHER:PTHR31717:SF39 |
| PFscan:PS50119 | SEG:seg | SMART:SM00336 | UniParc:UPI000276A7B0 | UniProt:K4DBG1 | MapMan:15.5.1.2 |
Description
No Description!
Coordinates
chr12:-:756961..761422
Molecular Weight (calculated)
29705.3 Da
IEP (calculated)
4.246
GRAVY (calculated)
-0.534
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MGYICEYCGE QRSIVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLICER CNSQPAVVRC VEERISLCQN CDWSGHASSS SGSSMHKRQA LNSYTGCPSA
101: AELSNIWSFL LDDPSIGDTC EQRMGSMSIN DNRPRDGQDP QGKDNSQNVC AAVEANDMSI SEKSNLLVES SMPTFDNKLH NMEPPIGSSS KGCYMGAKGS
201: NLFEEDPYCD NLIMDAVDLS IENYEELFGD SLNYPDELFE NENLDSFFGM KDIKGADYSY HGVNATEVT
101: AELSNIWSFL LDDPSIGDTC EQRMGSMSIN DNRPRDGQDP QGKDNSQNVC AAVEANDMSI SEKSNLLVES SMPTFDNKLH NMEPPIGSSS KGCYMGAKGS
201: NLFEEDPYCD NLIMDAVDLS IENYEELFGD SLNYPDELFE NENLDSFFGM KDIKGADYSY HGVNATEVT
001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY
Arabidopsis Description
COL9AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.