Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G48250.1 | CDY22597 | AT1G32230.1 | 19548978 |
| AT5G48250.1 | CDY41739 | AT1G32230.1 | 19548978 |
| AT5G48250.1 | CDY43007 | AT1G32230.1 | 19548978 |
| AT5G48250.1 | CDY60257 | AT1G32230.1 | 19548978 |
| AT5G48250.1 | CDY67026 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48743 | Canola | nucleus | 95.39 | 94.57 |
| Bra020709.1-P | Field mustard | nucleus | 95.1 | 94.02 |
| CDX85321 | Canola | nucleus | 82.42 | 79.67 |
| CDX86318 | Canola | nucleus | 81.27 | 78.77 |
| AT5G48250.1 | Thale cress | nucleus | 81.84 | 76.14 |
| CDY07979 | Canola | nucleus | 68.01 | 67.05 |
| CDY35952 | Canola | nucleus | 70.32 | 66.12 |
| CDY22125 | Canola | nucleus | 69.16 | 65.57 |
| CDY28029 | Canola | nucleus | 69.74 | 65.05 |
| CDX74034 | Canola | nucleus | 68.3 | 60.77 |
| KRH17709 | Soybean | nucleus | 60.81 | 51.59 |
| KRG89998 | Soybean | nucleus | 60.52 | 51.34 |
| KRH72628 | Soybean | nucleus | 59.37 | 50.86 |
| KRH16989 | Soybean | nucleus | 60.23 | 50.85 |
| VIT_12s0057g01350.t01 | Wine grape | nucleus | 60.23 | 50.36 |
| PGSC0003DMT400074143 | Potato | nucleus | 56.48 | 48.04 |
| VIT_00s0194g00070.t01 | Wine grape | nucleus | 56.2 | 47.1 |
| Os02t0724000-01 | Rice | nucleus | 52.74 | 44.96 |
| PGSC0003DMT400044878 | Potato | nucleus | 53.03 | 44.77 |
| Os06t0298200-01 | Rice | nucleus | 52.45 | 44.61 |
| PGSC0003DMT400013624 | Potato | nucleus | 53.03 | 44.55 |
| KXG19836 | Sorghum | nucleus | 52.74 | 44.53 |
| Solyc05g020020.2.1 | Tomato | nucleus | 52.45 | 44.39 |
| Solyc07g045180.2.1 | Tomato | nucleus | 53.31 | 44.26 |
| TraesCS7A01G218600.1 | Wheat | nucleus | 50.43 | 44.19 |
| TraesCS7D01G220300.1 | Wheat | nucleus | 50.43 | 44.19 |
| TraesCS6A01G286400.3 | Wheat | nucleus | 49.28 | 43.85 |
| TraesCS6D01G267100.1 | Wheat | nucleus | 48.99 | 43.37 |
| HORVU6Hr1G071950.2 | Barley | nucleus | 47.55 | 43.19 |
| EES07342 | Sorghum | nucleus | 50.43 | 43.1 |
| GSMUA_Achr3P04260_001 | Banana | nucleus | 52.16 | 43.1 |
| GSMUA_Achr7P20150_001 | Banana | nucleus | 51.01 | 42.96 |
| Solyc12g006240.1.1 | Tomato | nucleus | 33.14 | 42.75 |
| GSMUA_Achr5P22460_001 | Banana | nucleus | 48.13 | 42.71 |
| TraesCS6B01G315400.1 | Wheat | nucleus | 47.84 | 42.56 |
| GSMUA_Achr10P... | Banana | nucleus | 48.99 | 42.39 |
| Zm00001d051684_P007 | Maize | nucleus | 48.99 | 41.87 |
| GSMUA_Achr9P12860_001 | Banana | nucleus | 48.99 | 40.77 |
| GSMUA_Achr5P04270_001 | Banana | nucleus | 49.57 | 40.76 |
| Zm00001d045804_P003 | Maize | nucleus | 51.01 | 40.6 |
| TraesCS7B01G125500.1 | Wheat | cytosol, nucleus, plastid | 38.33 | 39.47 |
| Zm00001d017885_P001 | Maize | nucleus | 44.38 | 33.41 |
| CDY69474 | Canola | nucleus, plastid | 8.93 | 32.29 |
| CDY64255 | Canola | nucleus | 31.7 | 29.65 |
| CDY15696 | Canola | nucleus | 23.63 | 28.37 |
| CDY55657 | Canola | nucleus | 31.41 | 28.24 |
| CDY02749 | Canola | nucleus, plastid | 20.17 | 27.03 |
| CDY04213 | Canola | nucleus | 25.94 | 26.79 |
| CDY19821 | Canola | nucleus | 21.33 | 25.17 |
| CDX88145 | Canola | nucleus | 21.04 | 24.83 |
| CDY68819 | Canola | nucleus | 26.8 | 24.03 |
| CDY30385 | Canola | nucleus | 26.8 | 24.03 |
| CDY11755 | Canola | nucleus | 27.09 | 23.92 |
| CDY36171 | Canola | nucleus | 19.88 | 23.79 |
| CDY53026 | Canola | nucleus | 22.77 | 23.65 |
| CDY45597 | Canola | nucleus | 19.6 | 23.53 |
| CDX80141 | Canola | nucleus | 22.48 | 23.49 |
| CDX85529 | Canola | nucleus | 21.33 | 23.34 |
| CDY26470 | Canola | nucleus | 22.19 | 23.12 |
| CDY25892 | Canola | nucleus | 22.19 | 23.12 |
| CDX90969 | Canola | nucleus | 21.33 | 23.05 |
| CDX80476 | Canola | nucleus, plastid | 21.61 | 22.8 |
| CDX87105 | Canola | nucleus, plastid | 20.75 | 22.71 |
| CDY58843 | Canola | nucleus, plastid | 22.19 | 22.51 |
| CDX90119 | Canola | nucleus | 27.09 | 22.43 |
| CDX69493 | Canola | nucleus | 21.61 | 22.26 |
| CDY66639 | Canola | nucleus | 25.65 | 22.08 |
| CDY71884 | Canola | nucleus | 17.87 | 21.02 |
| CDY71818 | Canola | nucleus | 17.87 | 20.95 |
| CDX69494 | Canola | nucleus | 21.9 | 20.65 |
| CDY49730 | Canola | nucleus | 12.97 | 20.64 |
| CDY26469 | Canola | nucleus | 21.61 | 20.49 |
| CDY07393 | Canola | nucleus | 26.8 | 17.35 |
| CDX91989 | Canola | nucleus | 11.24 | 17.11 |
| CDX74261 | Canola | nucleus | 10.09 | 15.35 |
| CDY48428 | Canola | nucleus | 11.53 | 14.81 |
Protein Annotations
| MapMan:15.5.1.2 | GO:A0A078EWT4 | InterPro:CCT_domain | EnsemblPlants:CDY05691 | ProteinID:CDY05691 | ProteinID:CDY05691.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0008270 | EnsemblPlantsGene:GSBRNA2T00120696001 | InterPro:IPR000315 | InterPro:IPR010402 | PFAM:PF00643 | PFAM:PF06203 |
| PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31717 | PANTHER:PTHR31717:SF39 | SMART:SM00336 | UniParc:UPI0004EAC7E2 |
| InterPro:Znf_B-box | SEG:seg | : | : | : | : |
Description
BnaC02g38460D
Coordinates
chrLK031963:+:941721..943767
Molecular Weight (calculated)
38385.5 Da
IEP (calculated)
5.474
GRAVY (calculated)
-0.624
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MGYICDFCNE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLICER CNAQPASVRC SDERVSLCQN CDWSGHNNDA TSQHKRQSIN CYSGCPSSEE
101: LASIWSFCLD SDLDFTSAGP SACEQEVGLM TIDEGTGEEK TGVQNVNVDQ PGTSFALAKE IGVSEDDFCG NLMMDEVDLA FEKYDELFGT AYNSSKDLFE
201: HGGIGSLFEK HEGSKAMQQP AGSNAASEDS FMTCRTGPII CFSSQPAHSN ISFSVVMGES SDCGASSMEK LSREITSQEE TNASSHATTR NNAVLRYKEK
301: KKARKFDKRV RYVSRKERAD VRRRVKGRFV KSGEAYDYDP MSPARSY
101: LASIWSFCLD SDLDFTSAGP SACEQEVGLM TIDEGTGEEK TGVQNVNVDQ PGTSFALAKE IGVSEDDFCG NLMMDEVDLA FEKYDELFGT AYNSSKDLFE
201: HGGIGSLFEK HEGSKAMQQP AGSNAASEDS FMTCRTGPII CFSSQPAHSN ISFSVVMGES SDCGASSMEK LSREITSQEE TNASSHATTR NNAVLRYKEK
301: KKARKFDKRV RYVSRKERAD VRRRVKGRFV KSGEAYDYDP MSPARSY
001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLVCER CNAQPASVRC SDERVSLCQN CDWSGHDGKN STTTSHHKRQ TINCYSGCPS
101: SAELSSIWSF CMDLNISSAE ESACEQGMGL MTIDEDGTGE KSGVQKINVE QPETSSAAQG MDHSSVPENS SMAKELGVCE DDFNGNLISD EVDLALENYE
201: ELFGSAFNSS RYLFEHGGIG SLFEKDEAHE GSMQQPALSN NASADSFMTC RTEPIICYSS KPAHSNISFS GITGESNAGD FQDCGASSMK QLSREPQPWC
301: HPTAQDIIAS SHATTRNNAV MRYKEKKKAR KFDKRVRYVS RKERADVRRR VKGRFVKSGE AYDYDPMSPT RSY
101: SAELSSIWSF CMDLNISSAE ESACEQGMGL MTIDEDGTGE KSGVQKINVE QPETSSAAQG MDHSSVPENS SMAKELGVCE DDFNGNLISD EVDLALENYE
201: ELFGSAFNSS RYLFEHGGIG SLFEKDEAHE GSMQQPALSN NASADSFMTC RTEPIICYSS KPAHSNISFS GITGESNAGD FQDCGASSMK QLSREPQPWC
301: HPTAQDIIAS SHATTRNNAV MRYKEKKKAR KFDKRVRYVS RKERADVRRR VKGRFVKSGE AYDYDPMSPT RSY
Arabidopsis Description
COL10Zinc finger protein CONSTANS-LIKE 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUA9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.