Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G57660.1 | CDX82214 | AT3G21150.1 | 21798944 |
| AT5G57660.1 | CDY19582 | AT3G21150.1 | 21798944 |
| AT5G57660.1 | CDY32408 | AT3G21150.1 | 21798944 |
| AT5G57660.1 | CDY50075 | AT3G21150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020425.1-P | Field mustard | nucleus, plastid | 99.71 | 99.71 |
| CDY02749 | Canola | nucleus, plastid | 73.68 | 97.3 |
| CDY25892 | Canola | nucleus | 83.04 | 85.29 |
| CDY49730 | Canola | nucleus | 54.09 | 84.86 |
| AT5G57660.1 | Thale cress | nucleus, plastid | 85.96 | 82.82 |
| KRH18980 | Soybean | nucleus | 57.89 | 54.25 |
| KRH02915 | Soybean | nucleus | 57.6 | 52.67 |
| CDY19821 | Canola | nucleus | 44.74 | 52.04 |
| CDX88145 | Canola | nucleus | 44.15 | 51.36 |
| CDY36171 | Canola | nucleus | 41.81 | 49.31 |
| CDY69474 | Canola | nucleus, plastid | 13.74 | 48.96 |
| CDY45597 | Canola | nucleus | 40.94 | 48.44 |
| CDX87105 | Canola | nucleus, plastid | 44.44 | 47.95 |
| CDX80476 | Canola | nucleus, plastid | 45.32 | 47.11 |
| CDY71884 | Canola | nucleus | 32.75 | 37.97 |
| CDX69493 | Canola | nucleus | 36.84 | 37.39 |
| CDY71818 | Canola | nucleus | 32.16 | 37.16 |
| CDY26470 | Canola | nucleus | 35.96 | 36.94 |
| CDX85529 | Canola | nucleus | 34.21 | 36.91 |
| CDX90969 | Canola | nucleus | 33.63 | 35.83 |
| CDX69494 | Canola | nucleus | 38.3 | 35.6 |
| CDY26469 | Canola | nucleus | 38.01 | 35.52 |
| CDX74261 | Canola | nucleus | 23.39 | 35.09 |
| TraesCS6A01G289400.1 | Wheat | nucleus | 35.96 | 33.33 |
| TraesCS6D01G269500.1 | Wheat | nucleus | 35.96 | 33.33 |
| CDX91989 | Canola | nucleus | 21.93 | 32.89 |
| TraesCS6B01G319500.1 | Wheat | nucleus | 35.38 | 32.7 |
| Os06t0275000-01 | Rice | mitochondrion | 35.96 | 31.14 |
| EER88227 | Sorghum | nucleus | 36.84 | 30.66 |
| TraesCS7D01G213000.2 | Wheat | nucleus | 33.92 | 30.29 |
| OQU85473 | Sorghum | nucleus | 32.16 | 30.05 |
| TraesCS7B01G118300.1 | Wheat | nucleus | 33.33 | 29.77 |
| Zm00001d045735_P002 | Maize | extracellular, vacuole | 37.13 | 29.67 |
| TraesCS7A01G211300.1 | Wheat | nucleus | 33.33 | 29.61 |
| CDY35952 | Canola | nucleus | 24.27 | 22.49 |
| CDY07979 | Canola | nucleus | 23.1 | 22.44 |
| CDY28029 | Canola | nucleus | 24.27 | 22.31 |
| CDY48743 | Canola | nucleus | 22.81 | 22.29 |
| CDY05691 | Canola | nucleus | 22.51 | 22.19 |
| CDY22125 | Canola | nucleus | 23.68 | 22.13 |
| CDY15696 | Canola | nucleus | 18.42 | 21.8 |
| CDY53026 | Canola | nucleus | 20.47 | 20.96 |
| CDX74034 | Canola | nucleus | 23.39 | 20.51 |
| CDX80141 | Canola | nucleus | 19.88 | 20.48 |
| CDX86318 | Canola | nucleus | 21.34 | 20.39 |
| CDX85321 | Canola | nucleus | 21.34 | 20.33 |
| CDY64255 | Canola | nucleus | 19.59 | 18.06 |
| CDY30385 | Canola | nucleus | 20.18 | 17.83 |
| CDY68819 | Canola | nucleus | 20.18 | 17.83 |
| CDY11755 | Canola | nucleus | 20.47 | 17.81 |
| CDY55657 | Canola | nucleus | 19.88 | 17.62 |
| CDY66639 | Canola | nucleus | 20.47 | 17.37 |
| CDX90119 | Canola | nucleus | 19.59 | 15.99 |
| CDY04213 | Canola | nucleus | 15.2 | 15.48 |
| CDY48428 | Canola | nucleus | 10.53 | 13.33 |
| CDY07393 | Canola | nucleus | 16.08 | 10.26 |
Protein Annotations
| MapMan:15.5.1.2 | GO:A0A078J4C8 | UniProt:A0A078J4C8 | InterPro:CCT_domain | EnsemblPlants:CDY58843 | ProteinID:CDY58843 |
| ProteinID:CDY58843.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008270 | EnsemblPlantsGene:GSBRNA2T00025194001 | InterPro:IPR000315 | InterPro:IPR010402 |
| PFAM:PF00643 | PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF14 |
| SMART:SM00336 | UniParc:UPI0004EED9F4 | InterPro:Znf_B-box | SEG:seg | : | : |
Description
BnaA02g35200DBnaA02g35200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J4C8]
Coordinates
chrLK033704:-:38130..39687
Molecular Weight (calculated)
37593.9 Da
IEP (calculated)
5.453
GRAVY (calculated)
-0.278
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFGLESIKP LSGGWGAAAR SCDACKSASA AVYCRFDSAF LCITCDTSIH SFTRHERVYL CEVCEQAPAA VTCKADAASL CVTCDSDIHS ANPLASRHER
101: VPVESFFDSA VAKISPSTFG VLGDSTTVDL TAVPVIGNAD ELGLCPWLLP NDFNEPAKIE TVTELKSSEF MFSDFDRLID FEYPNTFGAD SLVPVQTKTE
201: PLPVTNNDHC FDIDFCRSKL STFTYPTQSI SHSVSTSSLE YGVVPDGTTS VPFNRSTITT STGTTGEQPS SMDREARVLR YREKRKNRKF EKTIRYASRK
301: AYAESRPRIK GRFAKRTETE NDDVFFSQVY ASAGQYGVVP TF
101: VPVESFFDSA VAKISPSTFG VLGDSTTVDL TAVPVIGNAD ELGLCPWLLP NDFNEPAKIE TVTELKSSEF MFSDFDRLID FEYPNTFGAD SLVPVQTKTE
201: PLPVTNNDHC FDIDFCRSKL STFTYPTQSI SHSVSTSSLE YGVVPDGTTS VPFNRSTITT STGTTGEQPS SMDREARVLR YREKRKNRKF EKTIRYASRK
301: AYAESRPRIK GRFAKRTETE NDDVFFSQVY ASAGQYGVVP TF
001: MGFGLESIKS ISGGWGAAAR SCDACKSVTA AVFCRVDSAF LCIACDTRIH SFTRHERVWV CEVCEQAPAA VTCKADAAAL CVSCDADIHS ANPLASRHER
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF
Arabidopsis Description
COL5Zinc finger protein CONSTANS-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHH8]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.