Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35952 | Canola | nucleus | 96.24 | 97.02 |
| Bra029666.1-P | Field mustard | nucleus | 96.77 | 93.26 |
| CDY07979 | Canola | nucleus | 85.48 | 90.34 |
| CDY22125 | Canola | nucleus | 87.63 | 89.07 |
| AT3G07650.1 | Thale cress | nucleus | 87.37 | 87.37 |
| CDX74034 | Canola | nucleus | 86.29 | 82.31 |
| CDY48743 | Canola | nucleus | 68.01 | 72.29 |
| CDY05691 | Canola | nucleus | 65.05 | 69.74 |
| CDX85321 | Canola | nucleus | 66.94 | 69.36 |
| CDX86318 | Canola | nucleus | 65.59 | 68.16 |
| KRH72628 | Soybean | nucleus | 63.44 | 58.27 |
| KRH17709 | Soybean | nucleus | 63.98 | 58.19 |
| KRG89998 | Soybean | nucleus | 63.44 | 57.7 |
| KRH16989 | Soybean | nucleus | 63.17 | 57.18 |
| VIT_12s0057g01350.t01 | Wine grape | nucleus | 61.83 | 55.42 |
| PGSC0003DMT400074143 | Potato | nucleus | 58.6 | 53.43 |
| VIT_00s0194g00070.t01 | Wine grape | nucleus | 58.87 | 52.9 |
| Os02t0724000-01 | Rice | nucleus | 55.91 | 51.11 |
| TraesCS7A01G218600.1 | Wheat | nucleus | 54.3 | 51.01 |
| TraesCS7D01G220300.1 | Wheat | nucleus | 54.3 | 51.01 |
| Os06t0298200-01 | Rice | nucleus | 55.91 | 50.98 |
| KXG19836 | Sorghum | nucleus | 56.18 | 50.85 |
| PGSC0003DMT400044878 | Potato | nucleus | 55.38 | 50.12 |
| Solyc05g020020.2.1 | Tomato | nucleus | 54.84 | 49.76 |
| Solyc07g045180.2.1 | Tomato | nucleus | 55.65 | 49.52 |
| TraesCS6A01G286400.3 | Wheat | nucleus | 51.88 | 49.49 |
| PGSC0003DMT400013624 | Potato | nucleus | 54.84 | 49.39 |
| HORVU6Hr1G071950.2 | Barley | nucleus | 50.54 | 49.21 |
| TraesCS6D01G267100.1 | Wheat | nucleus | 51.34 | 48.72 |
| TraesCS6B01G315400.1 | Wheat | nucleus | 50.54 | 48.21 |
| Zm00001d051684_P007 | Maize | nucleus | 52.15 | 47.78 |
| GSMUA_Achr3P04260_001 | Banana | nucleus | 53.49 | 47.38 |
| EES07342 | Sorghum | nucleus | 51.61 | 47.29 |
| Zm00001d045804_P003 | Maize | nucleus | 55.38 | 47.25 |
| Solyc12g006240.1.1 | Tomato | nucleus | 34.14 | 47.21 |
| GSMUA_Achr9P12860_001 | Banana | nucleus | 52.42 | 46.76 |
| GSMUA_Achr7P20150_001 | Banana | nucleus | 51.61 | 46.6 |
| TraesCS7B01G125500.1 | Wheat | cytosol, nucleus, plastid | 41.94 | 46.29 |
| GSMUA_Achr5P22460_001 | Banana | nucleus | 48.39 | 46.04 |
| GSMUA_Achr10P... | Banana | nucleus | 49.46 | 45.89 |
| GSMUA_Achr5P04270_001 | Banana | nucleus | 50.54 | 44.55 |
| Zm00001d017885_P001 | Maize | nucleus | 45.7 | 36.88 |
| CDY69474 | Canola | nucleus, plastid | 8.6 | 33.33 |
| CDY64255 | Canola | nucleus | 30.65 | 30.73 |
| CDY15696 | Canola | nucleus | 23.39 | 30.1 |
| CDY55657 | Canola | nucleus | 30.65 | 29.53 |
| CDY02749 | Canola | nucleus, plastid | 20.43 | 29.34 |
| CDY04213 | Canola | nucleus | 25.0 | 27.68 |
| CDY19821 | Canola | nucleus | 21.24 | 26.87 |
| CDY36171 | Canola | nucleus | 20.7 | 26.55 |
| CDY45597 | Canola | nucleus | 20.43 | 26.3 |
| CDX88145 | Canola | nucleus | 20.43 | 25.85 |
| CDX85529 | Canola | nucleus | 21.24 | 24.92 |
| CDY30385 | Canola | nucleus | 25.81 | 24.81 |
| CDY68819 | Canola | nucleus | 25.81 | 24.81 |
| CDY11755 | Canola | nucleus | 26.08 | 24.68 |
| CDX90969 | Canola | nucleus | 21.24 | 24.61 |
| CDX87105 | Canola | nucleus, plastid | 20.7 | 24.29 |
| CDY58843 | Canola | nucleus, plastid | 22.31 | 24.27 |
| CDY25892 | Canola | nucleus | 21.51 | 24.02 |
| CDY26470 | Canola | nucleus | 21.24 | 23.72 |
| CDX80476 | Canola | nucleus, plastid | 20.97 | 23.71 |
| CDX69493 | Canola | nucleus | 21.24 | 23.44 |
| CDX90119 | Canola | nucleus | 26.08 | 23.15 |
| CDY66639 | Canola | nucleus | 25.0 | 23.08 |
| CDY71884 | Canola | nucleus | 18.01 | 22.71 |
| CDY71818 | Canola | nucleus | 18.01 | 22.64 |
| CDY26469 | Canola | nucleus | 22.04 | 22.4 |
| CDX69494 | Canola | nucleus | 22.04 | 22.28 |
| CDY49730 | Canola | nucleus | 12.9 | 22.02 |
| CDX80141 | Canola | nucleus | 19.62 | 21.99 |
| CDY53026 | Canola | nucleus | 19.62 | 21.86 |
| CDX91989 | Canola | nucleus | 11.29 | 18.42 |
| CDY07393 | Canola | nucleus | 26.08 | 18.1 |
| CDX74261 | Canola | nucleus | 10.75 | 17.54 |
| CDY48428 | Canola | nucleus | 11.83 | 16.3 |
Protein Annotations
| MapMan:15.5.1.2 | GO:A0A078GSA0 | UniProt:A0A078GSA0 | InterPro:CCT_domain | EnsemblPlants:CDY28029 | ProteinID:CDY28029 |
| ProteinID:CDY28029.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008270 | EnsemblPlantsGene:GSBRNA2T00038967001 | InterPro:IPR000315 | InterPro:IPR010402 |
| PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31717 | PANTHER:PTHR31717:SF39 | SMART:SM00336 |
| UniParc:UPI0004EEEFEA | InterPro:Znf_B-box | SEG:seg | : | : | : |
Description
BnaC05g44310DBnaC05g44310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GSA0]
Coordinates
chrLK032213:-:325813..328687
Molecular Weight (calculated)
40659.7 Da
IEP (calculated)
5.656
GRAVY (calculated)
-0.704
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNNN NNSSSSSSNN HKRQTISCYS
101: GCPSSSELAS IWSFCLELAG QSGCEQEMGM MNIDDDGQGN QNCNEDKKDV VAGSSSRPET SSAAPATSSF PKDVRVCEDD FYGNLGMDEV DLALENYEEL
201: FGTAFNTSGE LFGQGGIDSL FQKHHQAAAP DGGNLVQPAE SNDDSFMSSK TEPIICFTSK PAHSNISFSG VTGDCSAGDF QECGASSSMQ LSGEPPWYPQ
301: ASSQDNNASS HSVTRNNAVM RYKEKKKARK FDKTVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY
101: GCPSSSELAS IWSFCLELAG QSGCEQEMGM MNIDDDGQGN QNCNEDKKDV VAGSSSRPET SSAAPATSSF PKDVRVCEDD FYGNLGMDEV DLALENYEEL
201: FGTAFNTSGE LFGQGGIDSL FQKHHQAAAP DGGNLVQPAE SNDDSFMSSK TEPIICFTSK PAHSNISFSG VTGDCSAGDF QECGASSSMQ LSGEPPWYPQ
301: ASSQDNNASS HSVTRNNAVM RYKEKKKARK FDKTVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY
001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY
Arabidopsis Description
COL9AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.