Factsheet for PGSC0003DMT400044878

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400038368
PGSC0003DMT400043197

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48250.1	PGSC0003DMT400038368	AT1G32230.1	19548978
AT5G48250.1	PGSC0003DMT400043197	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g045180.2.1	Tomato	nucleus	92.94	91.39
PGSC0003DMT400074143	Potato	nucleus	68.61	69.12
PGSC0003DMT400013624	Potato	nucleus	68.37	68.04
KRG89998	Soybean	nucleus	59.85	60.15
KRH17709	Soybean	nucleus	58.88	59.17
KRH72628	Soybean	nucleus	57.66	58.52
VIT_12s0057g01350.t01	Wine grape	nucleus	58.88	58.31
KRH16989	Soybean	nucleus	57.18	57.18
Bra001264.1-P	Field mustard	nucleus	47.93	56.13
CDY35952	Canola	nucleus	50.37	56.1
AT3G07650.1	Thale cress	nucleus	50.37	55.65
VIT_00s0194g00070.t01	Wine grape	nucleus	55.96	55.56
CDY28029	Canola	nucleus	50.12	55.38
CDY22125	Canola	nucleus	49.15	55.19
CDY07979	Canola	nucleus	47.2	55.11
Bra040020.1-P	Field mustard	nucleus	48.91	54.92
CDY48743	Canola	nucleus	46.72	54.86
Bra020709.1-P	Field mustard	nucleus	46.47	54.42
CDX85321	Canola	nucleus	47.45	54.32
Bra029666.1-P	Field mustard	nucleus	50.37	53.63
CDX86318	Canola	nucleus	46.47	53.35
CDY05691	Canola	nucleus	44.77	53.03
AT5G48250.1	Thale cress	nucleus	47.93	52.81
Bra037499.1-P	Field mustard	nucleus	44.04	52.46
CDX74034	Canola	nucleus	47.93	50.51
GSMUA_Achr3P04260_001	Banana	nucleus	51.34	50.24
Os06t0298200-01	Rice	nucleus	49.63	50.0
TraesCS7A01G218600.1	Wheat	nucleus	47.93	49.75
TraesCS7D01G220300.1	Wheat	nucleus	47.93	49.75
KXG19836	Sorghum	nucleus	49.39	49.39
GSMUA_Achr9P12860_001	Banana	nucleus	49.88	49.16
Os02t0724000-01	Rice	nucleus	48.42	48.89
GSMUA_Achr10P...	Banana	nucleus	47.69	48.88
TraesCS6B01G315400.1	Wheat	nucleus	45.26	47.69
TraesCS6A01G286400.3	Wheat	nucleus	45.01	47.44
HORVU6Hr1G071950.2	Barley	nucleus	44.04	47.38
GSMUA_Achr7P20150_001	Banana	nucleus	47.45	47.33
GSMUA_Achr5P04270_001	Banana	nucleus	48.42	47.16
TraesCS6D01G267100.1	Wheat	nucleus	44.53	46.68
EES07342	Sorghum	nucleus	45.74	46.31
GSMUA_Achr5P22460_001	Banana	nucleus	44.04	46.29
TraesCS7B01G125500.1	Wheat	cytosol, nucleus, plastid	37.71	45.99
Zm00001d045804_P003	Maize	nucleus	48.66	45.87
Zm00001d051684_P007	Maize	nucleus	44.77	45.32
Zm00001d017885_P001	Maize	nucleus	40.39	36.01
PGSC0003DMT400003198	Potato	nucleus	33.58	32.7
PGSC0003DMT400075520	Potato	nucleus	20.92	24.09
PGSC0003DMT400067657	Potato	nucleus	19.71	23.34
PGSC0003DMT400015373	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	27.01	22.7
PGSC0003DMT400065377	Potato	nucleus	23.6	21.41
PGSC0003DMT400029591	Potato	nucleus	19.71	21.37
PGSC0003DMT400026065	Potato	nucleus	21.41	21.31
PGSC0003DMT400026068	Potato	nucleus	20.68	20.99
PGSC0003DMT400070680	Potato	nucleus	18.73	20.0
PGSC0003DMT400068637	Potato	nucleus	11.19	17.36
PGSC0003DMT400016342	Potato	nucleus	10.95	17.05
PGSC0003DMT400092769	Potato	nucleus	9.73	15.44

Protein Annotations

EntrezGene:102580320	MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	InterPro:IPR000315
InterPro:IPR010402	EMBL:KX576517	UniProt:M1BGT7	PFAM:PF06203	EnsemblPlantsGene:PGSC0003DMG400017411	PGSC:PGSC0003DMG400017411
EnsemblPlants:PGSC0003DMT400044878	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF39	SMART:SM00336
UniParc:UPI0002949428	RefSeq:XP_006357679.1	RefSeq:XP_006357681.1	RefSeq:XP_015169010.1	InterPro:Znf_B-box	SEG:seg

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400017411]

Coordinates

chr7:+:43163087..43172665

Molecular Weight (calculated)

45676.2 Da

IEP (calculated)

5.330

GRAVY (calculated)

-0.593

Length

411 amino acids

Sequence
(BLAST)

001: MGYICEYCGE QRSIVYCRSD SACLCLSCDR NIHSANALSQ RHSRTLVCER CNSQPAIFRC VEERVSLCQN CDWMAHASSS TCLTHKRQAL SCYTGCPSAV
101: ELSTIWSFLL GDPSIRDLTC EQGMGSMSIT DCQPGDSQHP QVKEKSQDMS SALDEANDLH NLVKSAPFMG SSMPSLDNEL HNVELLVGST NLTWSKVRNS
201: GTKGYDDPFS DDFNMDEVDL SIENYEELFG VSIDNRDRLF KNEDIDDFFG TKDMSTAESS FQGVNAVEGS AVGKVNTVKS ACSNAASAES MMSCKTEPPT
301: LCFAMQQSSF SFSNLTGESN AGDNQDCGAS SMLSMGEPSW RPPCPESSMP STSRSDAVLR YKEKKKKRQF DKRVRYVSRK TRAEVRKRVK GRFVKDGDAY
401: DYDPLHQTRS Y

Best Arabidopsis Sequence Match ( AT5G48250.1 )
(BLAST)

001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLVCER CNAQPASVRC SDERVSLCQN CDWSGHDGKN STTTSHHKRQ TINCYSGCPS
101: SAELSSIWSF CMDLNISSAE ESACEQGMGL MTIDEDGTGE KSGVQKINVE QPETSSAAQG MDHSSVPENS SMAKELGVCE DDFNGNLISD EVDLALENYE
201: ELFGSAFNSS RYLFEHGGIG SLFEKDEAHE GSMQQPALSN NASADSFMTC RTEPIICYSS KPAHSNISFS GITGESNAGD FQDCGASSMK QLSREPQPWC
301: HPTAQDIIAS SHATTRNNAV MRYKEKKKAR KFDKRVRYVS RKERADVRRR VKGRFVKSGE AYDYDPMSPT RSY

Arabidopsis Description

COL10Zinc finger protein CONSTANS-LIKE 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.