Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001264.1-P | Field mustard | nucleus | 89.49 | 99.43 |
| CDY07979 | Canola | nucleus | 87.18 | 96.59 |
| CDY28029 | Canola | nucleus | 82.31 | 86.29 |
| CDY35952 | Canola | nucleus | 81.54 | 86.18 |
| CDY22125 | Canola | nucleus | 80.0 | 85.25 |
| AT3G07650.1 | Thale cress | nucleus | 78.97 | 82.8 |
| CDY48743 | Canola | nucleus | 62.56 | 69.71 |
| CDY05691 | Canola | nucleus | 60.77 | 68.3 |
| CDX85321 | Canola | nucleus | 62.31 | 67.69 |
| CDX86318 | Canola | nucleus | 61.54 | 67.04 |
| KRG89998 | Soybean | nucleus | 59.49 | 56.72 |
| KRH72628 | Soybean | nucleus | 58.72 | 56.54 |
| KRH17709 | Soybean | nucleus | 58.97 | 56.23 |
| KRH16989 | Soybean | nucleus | 57.95 | 54.99 |
| VIT_12s0057g01350.t01 | Wine grape | nucleus | 56.92 | 53.49 |
| VIT_00s0194g00070.t01 | Wine grape | nucleus | 54.87 | 51.69 |
| PGSC0003DMT400074143 | Potato | nucleus | 52.31 | 50.0 |
| Os06t0298200-01 | Rice | nucleus | 52.31 | 50.0 |
| KXG19836 | Sorghum | nucleus | 52.56 | 49.88 |
| Os02t0724000-01 | Rice | nucleus | 51.03 | 48.89 |
| TraesCS6A01G286400.3 | Wheat | nucleus | 48.21 | 48.21 |
| Solyc07g045180.2.1 | Tomato | nucleus | 51.54 | 48.09 |
| Solyc05g020020.2.1 | Tomato | nucleus | 50.51 | 48.05 |
| PGSC0003DMT400044878 | Potato | nucleus | 50.51 | 47.93 |
| TraesCS7A01G218600.1 | Wheat | nucleus | 48.46 | 47.73 |
| TraesCS7D01G220300.1 | Wheat | nucleus | 48.46 | 47.73 |
| PGSC0003DMT400013624 | Potato | nucleus | 50.51 | 47.7 |
| TraesCS6B01G315400.1 | Wheat | nucleus | 47.69 | 47.69 |
| HORVU6Hr1G071950.2 | Barley | nucleus | 46.67 | 47.64 |
| TraesCS6D01G267100.1 | Wheat | nucleus | 47.69 | 47.45 |
| GSMUA_Achr3P04260_001 | Banana | nucleus | 50.0 | 46.43 |
| EES07342 | Sorghum | nucleus | 47.95 | 46.06 |
| Zm00001d045804_P003 | Maize | nucleus | 51.28 | 45.87 |
| Zm00001d051684_P007 | Maize | nucleus | 47.69 | 45.81 |
| GSMUA_Achr7P20150_001 | Banana | nucleus | 47.95 | 45.39 |
| GSMUA_Achr5P22460_001 | Banana | nucleus | 45.38 | 45.27 |
| GSMUA_Achr9P12860_001 | Banana | nucleus | 48.21 | 45.08 |
| GSMUA_Achr10P... | Banana | nucleus | 46.15 | 44.89 |
| GSMUA_Achr5P04270_001 | Banana | nucleus | 47.69 | 44.08 |
| Solyc12g006240.1.1 | Tomato | nucleus | 29.49 | 42.75 |
| TraesCS7B01G125500.1 | Wheat | cytosol, nucleus, plastid | 36.67 | 42.43 |
| Zm00001d017885_P001 | Maize | nucleus | 41.79 | 35.36 |
| CDY69474 | Canola | nucleus, plastid | 8.21 | 33.33 |
| CDY64255 | Canola | nucleus | 28.46 | 29.92 |
| CDY15696 | Canola | nucleus | 21.28 | 28.72 |
| CDY02749 | Canola | nucleus, plastid | 18.97 | 28.57 |
| CDY55657 | Canola | nucleus | 28.21 | 28.5 |
| CDY04213 | Canola | nucleus | 23.33 | 27.08 |
| CDY19821 | Canola | nucleus | 19.23 | 25.51 |
| CDX85529 | Canola | nucleus | 20.51 | 25.24 |
| CDY36171 | Canola | nucleus | 18.72 | 25.17 |
| CDX88145 | Canola | nucleus | 18.97 | 25.17 |
| CDX90969 | Canola | nucleus | 20.51 | 24.92 |
| CDY45597 | Canola | nucleus | 18.46 | 24.91 |
| CDY26470 | Canola | nucleus | 20.51 | 24.02 |
| CDY30385 | Canola | nucleus | 23.59 | 23.77 |
| CDY68819 | Canola | nucleus | 23.59 | 23.77 |
| CDY11755 | Canola | nucleus | 23.59 | 23.41 |
| CDY58843 | Canola | nucleus, plastid | 20.51 | 23.39 |
| CDX69493 | Canola | nucleus | 20.0 | 23.15 |
| CDY25892 | Canola | nucleus | 19.74 | 23.12 |
| CDX80476 | Canola | nucleus, plastid | 19.49 | 23.1 |
| CDX87105 | Canola | nucleus, plastid | 18.72 | 23.03 |
| CDY71884 | Canola | nucleus | 17.18 | 22.71 |
| CDY71818 | Canola | nucleus | 17.18 | 22.64 |
| CDY66639 | Canola | nucleus | 23.08 | 22.33 |
| CDX80141 | Canola | nucleus | 18.97 | 22.29 |
| CDY53026 | Canola | nucleus | 18.97 | 22.16 |
| CDX90119 | Canola | nucleus | 23.59 | 21.96 |
| CDY26469 | Canola | nucleus | 20.26 | 21.58 |
| CDX69494 | Canola | nucleus | 20.26 | 21.47 |
| CDY49730 | Canola | nucleus | 11.54 | 20.64 |
| CDX91989 | Canola | nucleus | 10.51 | 17.98 |
| CDY07393 | Canola | nucleus | 24.36 | 17.72 |
| CDX74261 | Canola | nucleus | 10.26 | 17.54 |
| CDY48428 | Canola | nucleus | 10.77 | 15.56 |
Protein Annotations
| MapMan:15.5.1.2 | GO:A0A078CCY3 | InterPro:CCT_domain | EnsemblPlants:CDX74034 | ProteinID:CDX74034 | ProteinID:CDX74034.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0008270 | EnsemblPlantsGene:GSBRNA2T00111777001 | InterPro:IPR000315 | InterPro:IPR010402 | PFAM:PF06203 | PFscan:PS50119 |
| PFscan:PS51017 | PANTHER:PTHR31717 | PANTHER:PTHR31717:SF39 | SMART:SM00336 | UniParc:UPI0004EEBE63 | InterPro:Znf_B-box |
| SEG:seg | : | : | : | : | : |
Description
BnaA03g30130D
Coordinates
chrLK031800:-:1022152..1024813
Molecular Weight (calculated)
42960.6 Da
IEP (calculated)
6.407
GRAVY (calculated)
-0.693
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MGYMCDFCGD QRSMVYCRSD SACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNNS TSSNDHKRQT ISCYSGCPSS
101: SELASIWSFC SELAGESACE QEMGMMNIDD DGQTKQNCNE DKKDETSSAA QATNASFAKR SPAQITSEKK LINITCCGFG SGDYKLWPPT SCPLKNYHDV
201: GVSEDDFYGN LGMDEVDLAL DNYEELFGTA FNTSVHLFGQ GGVDSLFQKH QQAAAPEGGN LVQPAESNDD SFMSSKTEPI ICYTSKPAHS NISFSGVTGE
301: SSAGDFQECG ASSSVQLTGE PPWHPQTSQS VTRNNAVMRY KEKKKARKFD KRVRYASRKA RADVRRRVKG RFVKAGEAYD YDPLTPTRSY
101: SELASIWSFC SELAGESACE QEMGMMNIDD DGQTKQNCNE DKKDETSSAA QATNASFAKR SPAQITSEKK LINITCCGFG SGDYKLWPPT SCPLKNYHDV
201: GVSEDDFYGN LGMDEVDLAL DNYEELFGTA FNTSVHLFGQ GGVDSLFQKH QQAAAPEGGN LVQPAESNDD SFMSSKTEPI ICYTSKPAHS NISFSGVTGE
301: SSAGDFQECG ASSSVQLTGE PPWHPQTSQS VTRNNAVMRY KEKKKARKFD KRVRYASRKA RADVRRRVKG RFVKAGEAYD YDPLTPTRSY
001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY
Arabidopsis Description
COL9AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.