Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G02380.1 | CDX82214 | AT3G21150.1 | 21798944 |
| AT3G02380.1 | CDY19582 | AT3G21150.1 | 21798944 |
| AT3G02380.1 | CDY32408 | AT3G21150.1 | 21798944 |
| AT3G02380.1 | CDY50075 | AT3G21150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71884 | Canola | nucleus | 95.27 | 95.59 |
| Bra021464.1-P | Field mustard | nucleus | 95.61 | 88.16 |
| AT3G02380.1 | Thale cress | nucleus | 81.08 | 69.16 |
| CDX74261 | Canola | nucleus | 50.0 | 64.91 |
| CDX91989 | Canola | nucleus | 49.66 | 64.47 |
| CDY69474 | Canola | nucleus, plastid | 18.92 | 58.33 |
| CDX85529 | Canola | nucleus | 56.42 | 52.68 |
| CDY26470 | Canola | nucleus | 58.11 | 51.65 |
| CDX69493 | Canola | nucleus | 58.45 | 51.34 |
| CDX90969 | Canola | nucleus | 55.41 | 51.09 |
| VIT_14s0083g00640.t01 | Wine grape | nucleus | 62.84 | 47.57 |
| Solyc02g089500.2.1 | Tomato | nucleus | 22.64 | 47.18 |
| KRH01455 | Soybean | nucleus | 52.7 | 44.32 |
| KRH45169 | Soybean | nucleus | 51.69 | 43.97 |
| KRG93763 | Soybean | nucleus | 54.05 | 43.72 |
| PGSC0003DMT400026068 | Potato | nucleus | 59.8 | 43.7 |
| PGSC0003DMT400026065 | Potato | nucleus | 60.81 | 43.58 |
| KRH18308 | Soybean | nucleus | 52.7 | 43.21 |
| CDX69494 | Canola | nucleus | 53.72 | 43.21 |
| CDY26469 | Canola | nucleus | 52.7 | 42.62 |
| CDY45597 | Canola | nucleus | 38.85 | 39.79 |
| CDY36171 | Canola | nucleus | 38.51 | 39.31 |
| CDY19821 | Canola | nucleus | 38.18 | 38.44 |
| CDY02749 | Canola | nucleus, plastid | 33.11 | 37.84 |
| CDX88145 | Canola | nucleus | 37.16 | 37.41 |
| CDX87105 | Canola | nucleus, plastid | 38.51 | 35.96 |
| CDX80476 | Canola | nucleus, plastid | 38.85 | 34.95 |
| CDY58843 | Canola | nucleus, plastid | 37.16 | 32.16 |
| CDY25892 | Canola | nucleus | 35.14 | 31.23 |
| CDY49730 | Canola | nucleus | 20.27 | 27.52 |
| CDX80141 | Canola | nucleus | 23.31 | 20.78 |
| CDY53026 | Canola | nucleus | 23.31 | 20.66 |
| CDY15696 | Canola | nucleus | 19.59 | 20.07 |
| CDY07979 | Canola | nucleus | 22.97 | 19.32 |
| HORVU0Hr1G022380.1 | Barley | cytosol | 18.24 | 19.01 |
| CDY35952 | Canola | nucleus | 22.97 | 18.43 |
| CDY28029 | Canola | nucleus | 22.64 | 18.01 |
| CDY48743 | Canola | nucleus | 21.28 | 18.0 |
| CDY05691 | Canola | nucleus | 20.95 | 17.87 |
| CDY22125 | Canola | nucleus | 21.96 | 17.76 |
| CDX74034 | Canola | nucleus | 22.64 | 17.18 |
| CDY11755 | Canola | nucleus | 22.64 | 17.05 |
| CDY64255 | Canola | nucleus | 20.95 | 16.71 |
| CDX86318 | Canola | nucleus | 19.93 | 16.48 |
| CDX85321 | Canola | nucleus | 19.93 | 16.43 |
| CDX90119 | Canola | nucleus | 22.97 | 16.23 |
| CDY55657 | Canola | nucleus | 20.95 | 16.06 |
| CDY66639 | Canola | nucleus | 21.28 | 15.63 |
| CDY68819 | Canola | nucleus | 20.27 | 15.5 |
| CDY30385 | Canola | nucleus | 20.27 | 15.5 |
| CDY04213 | Canola | nucleus | 15.54 | 13.69 |
| CDY48428 | Canola | nucleus | 10.47 | 11.48 |
| CDY07393 | Canola | nucleus | 17.23 | 9.51 |
Protein Annotations
| MapMan:15.5.1.2 | GO:A0A078JW35 | UniProt:A0A078JW35 | InterPro:CCT_domain | EnsemblPlants:CDY71818 | ProteinID:CDY71818 |
| ProteinID:CDY71818.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008270 | EnsemblPlantsGene:GSBRNA2T00020516001 | InterPro:IPR000315 | InterPro:IPR010402 |
| PFAM:PF00643 | PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF39 |
| SMART:SM00336 | UniParc:UPI0004EE2FCE | InterPro:Znf_B-box | SEG:seg | : | : |
Description
BnaAnng38870DBnaAnng38870D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JW35]
Coordinates
chrLK047654:+:1531..2431
Molecular Weight (calculated)
33046.3 Da
IEP (calculated)
6.769
GRAVY (calculated)
-0.730
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKEESNESG GTRACGTCRS AACTIYREAD STYLCTNCDA RVHAAKRVRV CDSCESAPAE FFCKADAASL CTACDAEIHS ANPLARRHQR VPITSNSCGS
101: MATDGDNNVM MVSEEKEDAD EVASWLMLNP GKNNQNNGFL FGVEYLDLVD YSSGTDNQFG DQYNHYQRSF GGGEDGVVPL QLEESSTSHM QQSQHNFHLG
201: VNYGYSTEPH YSYISVVPES TSSDTTVQHA KETIDQVSGP PTQMVQQLTP ADREARVLRY REKKKRRKFE KTIRYASRKA YAEVRPRIKG RFAKRI
101: MATDGDNNVM MVSEEKEDAD EVASWLMLNP GKNNQNNGFL FGVEYLDLVD YSSGTDNQFG DQYNHYQRSF GGGEDGVVPL QLEESSTSHM QQSQHNFHLG
201: VNYGYSTEPH YSYISVVPES TSSDTTVQHA KETIDQVSGP PTQMVQQLTP ADREARVLRY REKKKRRKFE KTIRYASRKA YAEVRPRIKG RFAKRI
001: MLKEESNESG TWARACDTCR SAACTVYCEA DSAYLCTTCD ARVHAANRVA SRHERVRVCQ SCESAPAAFL CKADAASLCT ACDAEIHSAN PLARRHQRVP
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF
Arabidopsis Description
COL2Zinc finger protein CONSTANS-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q96502]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.