Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71818 | Canola | nucleus | 69.16 | 81.08 |
| CDY71884 | Canola | nucleus | 68.88 | 81.02 |
| Bra021464.1-P | Field mustard | nucleus | 74.35 | 80.37 |
| AT5G15850.1 | Thale cress | nucleus | 67.15 | 65.63 |
| VIT_14s0083g00640.t01 | Wine grape | nucleus | 64.84 | 57.54 |
| KRH45169 | Soybean | nucleus | 57.06 | 56.9 |
| AT5G15840.1 | Thale cress | nucleus | 61.1 | 56.84 |
| KRH01455 | Soybean | nucleus | 55.91 | 55.11 |
| KRH18308 | Soybean | nucleus | 56.48 | 54.29 |
| KRG93763 | Soybean | nucleus | 57.06 | 54.1 |
| Solyc02g089500.2.1 | Tomato | nucleus | 21.9 | 53.52 |
| PGSC0003DMT400026065 | Potato | nucleus | 61.67 | 51.82 |
| PGSC0003DMT400026068 | Potato | nucleus | 59.94 | 51.36 |
| GSMUA_Achr4P18680_001 | Banana | nucleus | 12.39 | 48.86 |
| GSMUA_Achr3P28130_001 | Banana | nucleus | 38.04 | 47.14 |
| AT2G24790.1 | Thale cress | nucleus, plastid | 38.9 | 45.92 |
| GSMUA_Achr9P22690_001 | Banana | nucleus, plastid | 34.87 | 41.58 |
| AT5G24930.1 | Thale cress | nucleus | 42.94 | 41.16 |
| AT5G57660.1 | Thale cress | nucleus, plastid | 38.9 | 38.03 |
| AT2G47890.1 | Thale cress | nucleus | 21.04 | 21.99 |
| AT4G15250.1 | Thale cress | nucleus | 20.75 | 21.82 |
| AT3G07650.1 | Thale cress | nucleus | 23.05 | 21.51 |
| AT3G21880.2 | Thale cress | nucleus | 22.48 | 21.2 |
| HORVU0Hr1G022380.1 | Barley | cytosol | 17.0 | 20.77 |
| AT5G48250.1 | Thale cress | nucleus | 21.9 | 20.38 |
| AT2G33500.1 | Thale cress | nucleus | 20.75 | 17.91 |
| AT1G28050.1 | Thale cress | nucleus | 21.33 | 17.09 |
| AT1G68190.2 | Thale cress | extracellular, golgi, vacuole | 17.0 | 15.32 |
Protein Annotations
| MapMan:15.5.1.2 | EntrezGene:821298 | UniProt:A0A178VE79 | ProteinID:AAB67879.1 | ProteinID:AAF32446.1 | ProteinID:AAG12597.1 |
| ProteinID:AEE73800.1 | EMBL:AF370149 | ArrayExpress:AT3G02380 | EnsemblPlantsGene:AT3G02380 | RefSeq:AT3G02380 | TAIR:AT3G02380 |
| RefSeq:AT3G02380-TAIR-G | EnsemblPlants:AT3G02380.1 | TAIR:AT3G02380.1 | EMBL:AY059092 | EMBL:AY088779 | InterPro:CCT_domain |
| Symbol:COL2 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009658 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009909 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0046872 | InterPro:IPR000315 |
| InterPro:IPR010402 | EMBL:L81120 | RefSeq:NP_186887.1 | ProteinID:OAP03233.1 | PFAM:PF00643 | PFAM:PF06203 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50119 | PFscan:PS51017 |
| PANTHER:PTHR31319 | PANTHER:PTHR31319:SF39 | UniProt:Q96502 | SMART:SM00336 | UniParc:UPI000000145A | InterPro:Znf_B-box |
Description
COL2Zinc finger protein CONSTANS-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q96502]
Coordinates
chr3:-:487069..489467
Molecular Weight (calculated)
38525.6 Da
IEP (calculated)
5.637
GRAVY (calculated)
-0.599
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKEESNESG TWARACDTCR SAACTVYCEA DSAYLCTTCD ARVHAANRVA SRHERVRVCQ SCESAPAAFL CKADAASLCT ACDAEIHSAN PLARRHQRVP
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.