Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032061.1-P | Field mustard | nucleus | 77.55 | 78.89 |
| CDY45597 | Canola | nucleus | 77.55 | 78.89 |
| CDY36171 | Canola | nucleus | 77.21 | 78.28 |
| AT5G24930.1 | Thale cress | nucleus | 62.24 | 50.55 |
| VIT_11s0052g01800.t01 | Wine grape | nucleus, plastid | 56.46 | 45.98 |
| AT5G57660.1 | Thale cress | nucleus, plastid | 48.98 | 40.56 |
| AT3G02380.1 | Thale cress | nucleus | 45.92 | 38.9 |
| AT5G15850.1 | Thale cress | nucleus | 46.26 | 38.31 |
| AT5G15840.1 | Thale cress | nucleus | 42.18 | 33.24 |
| TraesCS6D01G269500.1 | Wheat | nucleus | 39.8 | 31.71 |
| TraesCS6A01G289400.1 | Wheat | nucleus | 38.78 | 30.89 |
| TraesCS6B01G319500.1 | Wheat | nucleus | 38.78 | 30.81 |
| EER88227 | Sorghum | nucleus | 40.48 | 28.95 |
| Os06t0275000-01 | Rice | mitochondrion | 38.44 | 28.61 |
| OQU85473 | Sorghum | nucleus | 35.37 | 28.42 |
| Zm00001d045735_P002 | Maize | extracellular, vacuole | 40.48 | 27.8 |
| TraesCS7D01G213000.2 | Wheat | nucleus | 36.05 | 27.68 |
| TraesCS7B01G118300.1 | Wheat | nucleus | 35.71 | 27.42 |
| TraesCS7A01G211300.1 | Wheat | nucleus | 35.37 | 27.01 |
| AT2G47890.1 | Thale cress | nucleus | 23.47 | 20.78 |
| AT3G07650.1 | Thale cress | nucleus | 24.15 | 19.09 |
| AT2G33500.1 | Thale cress | nucleus | 24.83 | 18.16 |
| AT3G21880.2 | Thale cress | nucleus | 22.45 | 17.93 |
| AT4G15250.1 | Thale cress | nucleus | 20.07 | 17.88 |
| AT5G48250.1 | Thale cress | nucleus | 22.45 | 17.69 |
| AT1G28050.1 | Thale cress | nucleus | 25.17 | 17.09 |
| AT1G68190.2 | Thale cress | extracellular, golgi, vacuole | 15.65 | 11.95 |
Protein Annotations
| MapMan:15.5.1.2 | EntrezGene:817016 | ProteinID:AAD23033.1 | ProteinID:AAM15476.1 | ProteinID:AEC07629.1 | ArrayExpress:AT2G24790 |
| EnsemblPlantsGene:AT2G24790 | RefSeq:AT2G24790 | TAIR:AT2G24790 | RefSeq:AT2G24790-TAIR-G | EnsemblPlants:AT2G24790.1 | TAIR:AT2G24790.1 |
| EMBL:AY058130 | EMBL:AY085729 | EMBL:AY140103 | Unigene:At.24362 | EMBL:BT002107 | InterPro:CCT_domain |
| Symbol:COL3 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009908 |
| GO:GO:0009909 | GO:GO:0009987 | GO:GO:0010099 | GO:GO:0010161 | GO:GO:0043565 | GO:GO:0046872 |
| InterPro:IPR000315 | InterPro:IPR010402 | RefSeq:NP_180052.1 | PFAM:PF00643 | PFAM:PF06203 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50119 |
| PFscan:PS51017 | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF39 | UniProt:Q9SK53 | SMART:SM00336 | UniParc:UPI0000000E3F |
| InterPro:Znf_B-box | SEG:seg | : | : | : | : |
Description
COL3Zinc finger protein CONSTANS-LIKE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK53]
Coordinates
chr2:+:10566836..10568145
Molecular Weight (calculated)
32325.9 Da
IEP (calculated)
6.653
GRAVY (calculated)
-0.432
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSRLCDS CKSTAATLFC RADAAFLCGD CDGKIHTANK LASRHERVWL CEVCEQAPAH VTCKADAAAL CVTCDRDIHS ANPLSRRHER VPITPFYDAV
101: GPAKSASSSV NFVDEDGGDV TASWLLAKEG IEITNLFSDL DYPKIEVTSE ENSSGNDGVV PVQNKLFLNE DYFNFDLSAS KISQQGFNFI NQTVSTRTID
201: VPLVPESGGV TAEMTNTETP AVQLSPAERE ARVLRYREKR KNRKFEKTIR YASRKAYAEM RPRIKGRFAK RTDSRENDGG DVGVYGGFGV VPSF
101: GPAKSASSSV NFVDEDGGDV TASWLLAKEG IEITNLFSDL DYPKIEVTSE ENSSGNDGVV PVQNKLFLNE DYFNFDLSAS KISQQGFNFI NQTVSTRTID
201: VPLVPESGGV TAEMTNTETP AVQLSPAERE ARVLRYREKR KNRKFEKTIR YASRKAYAEM RPRIKGRFAK RTDSRENDGG DVGVYGGFGV VPSF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.