Factsheet for VIT_11s0052g01800.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0059g01420.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24790.1	VIT_12s0059g01420.t01	AT2G32950.1	16339850

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g07340.t01	Wine grape	nucleus, plastid	57.62	59.94
CDY36171	Canola	nucleus	46.81	58.28
Bra032061.1-P	Field mustard	nucleus	46.26	57.79
CDY45597	Canola	nucleus	46.26	57.79
AT2G24790.1	Thale cress	nucleus, plastid	45.98	56.46
VIT_14s0083g00640.t01	Wine grape	nucleus	46.81	43.22
TraesCS6D01G269500.1	Wheat	nucleus	39.06	38.21
TraesCS6B01G319500.1	Wheat	nucleus	38.23	37.3
TraesCS6A01G289400.1	Wheat	nucleus	37.67	36.86
EER88227	Sorghum	nucleus	41.27	36.25
Os06t0275000-01	Rice	mitochondrion	37.67	34.43
TraesCS7D01G213000.2	Wheat	nucleus	36.01	33.94
Zm00001d045735_P002	Maize	extracellular, vacuole	40.17	33.88
TraesCS7B01G118300.1	Wheat	nucleus	35.46	33.42
TraesCS7A01G211300.1	Wheat	nucleus	35.18	32.99
OQU85473	Sorghum	nucleus	32.96	32.51
VIT_07s0104g01360.t01	Wine grape	nucleus	22.44	20.56
VIT_12s0057g01350.t01	Wine grape	nucleus	22.71	19.76
VIT_00s0194g00070.t01	Wine grape	nucleus	22.16	19.32
VIT_14s0068g01380.t01	Wine grape	nucleus	23.27	18.71
VIT_01s0146g00360.t01	Wine grape	nucleus	24.1	18.55
VIT_12s0059g02500.t01	Wine grape	nucleus	20.22	16.82
VIT_19s0014g05120.t01	Wine grape	nucleus	15.79	15.2
VIT_01s0011g04240.t01	Wine grape	nucleus	13.85	14.01

Protein Annotations

EntrezGene:100244502	wikigene:100244502	MapMan:15.5.1.2	ProteinID:CCB44592	ProteinID:CCB44592.1	InterPro:CCT_domain
UniProt:F6GXA6	EMBL:FN594964	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008270	GO:GO:0009416
GO:GO:0009628	GO:GO:0009791	GO:GO:0009908	GO:GO:0009909	GO:GO:0009987	GO:GO:0010099
GO:GO:0010161	GO:GO:0043565	InterPro:IPR000315	InterPro:IPR010402	EMBL:KX986749	EntrezGene:LOC100244502
wikigene:LOC100244502	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319
PANTHER:PTHR31319:SF14	SMART:SM00336	TIGR:TC56447	UniParc:UPI0001984443	ArrayExpress:VIT_11s0052g01800	EnsemblPlantsGene:VIT_11s0052g01800
EnsemblPlants:VIT_11s0052g01800.t01	unigene:Vvi.7006	RefSeq:XP_002277953	RefSeq:XP_002277953.1	InterPro:Znf_B-box	SEG:seg

Description

CONSTANS-like protein 5 [Source:UniProtKB/TrEMBL;Acc:F6GXA6]

Coordinates

chr11:+:19620913..19622421

Molecular Weight (calculated)

38995.5 Da

IEP (calculated)

6.771

GRAVY (calculated)

-0.415

Length

361 amino acids

Sequence
(BLAST)

001: MGFQELNGKT FSAATWALAA KPCDSCKSAA ALLFCRADSA FLCVGCDSKI HGANKLASRH ERVWMCEVCE QAPASVTCKA DAAALCVTCD RDIHSANPLA
101: RRHDRVPVVP FYDSAESLVK STAAAVGFLV PGGAGDEEDS EAASWLLPNP KLPEGPEVKS GEVFFSDIDP FLDFDYPDAK FPHHHHHHCG GNDGVVPVQA
201: KDPSPPVTNH PADNCFELDF SRSKLSAYNY TAQSLSQSIS SSDVGVVPDG NCNSMSDTSY PSMKQVSGGG GGGSTGSQAT QLSGMDREAR VLRYREKRKN
301: RKFEKTIRYA SRKAYAETRP RIKGRFAKRT EMESEMVDHI YNSASAAAFM VDAGYGVVPS Y

Best Arabidopsis Sequence Match ( AT5G57660.1 )
(BLAST)

001: MGFGLESIKS ISGGWGAAAR SCDACKSVTA AVFCRVDSAF LCIACDTRIH SFTRHERVWV CEVCEQAPAA VTCKADAAAL CVSCDADIHS ANPLASRHER
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF

Arabidopsis Description

COL5Zinc finger protein CONSTANS-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHH8]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.