Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| KXG31183 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G24790.1 | KXG31183 | AT2G32950.1 | 16339850 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d045735_P002 | Maize | extracellular, vacuole | 83.45 | 80.14 |
| Os06t0275000-01 | Rice | mitochondrion | 69.83 | 72.66 |
| OQU85473 | Sorghum | nucleus | 45.26 | 50.82 |
| CDY02749 | Canola | nucleus, plastid | 28.22 | 44.79 |
| CDY19821 | Canola | nucleus | 31.14 | 43.54 |
| CDX88145 | Canola | nucleus | 30.41 | 42.52 |
| VIT_04s0008g07340.t01 | Wine grape | nucleus, plastid | 35.52 | 42.07 |
| Bra032061.1-P | Field mustard | nucleus | 29.44 | 41.87 |
| CDY45597 | Canola | nucleus | 29.44 | 41.87 |
| VIT_11s0052g01800.t01 | Wine grape | nucleus, plastid | 36.25 | 41.27 |
| EES12446 | Sorghum | nucleus | 32.85 | 41.03 |
| CDY36171 | Canola | nucleus | 28.71 | 40.69 |
| AT2G24790.1 | Thale cress | nucleus, plastid | 28.95 | 40.48 |
| CDX87105 | Canola | nucleus, plastid | 30.9 | 40.06 |
| CDX80476 | Canola | nucleus, plastid | 31.63 | 39.51 |
| Bra036528.1-P | Field mustard | nucleus | 32.85 | 39.13 |
| Bra009805.1-P | Field mustard | nucleus | 33.09 | 38.75 |
| AT5G24930.1 | Thale cress | nucleus | 33.58 | 38.12 |
| KRH18980 | Soybean | nucleus | 33.58 | 37.81 |
| EES05406 | Sorghum | nucleus | 30.66 | 37.5 |
| KRH02915 | Soybean | nucleus | 33.82 | 37.17 |
| AT5G57660.1 | Thale cress | nucleus, plastid | 31.87 | 36.9 |
| CDY58843 | Canola | nucleus, plastid | 30.66 | 36.84 |
| Bra020425.1-P | Field mustard | nucleus, plastid | 30.66 | 36.84 |
| CDY25892 | Canola | nucleus | 28.71 | 35.44 |
| Solyc07g006630.2.1 | Tomato | nucleus | 33.09 | 35.23 |
| PGSC0003DMT400070680 | Potato | nucleus | 32.85 | 35.06 |
| CDY49730 | Canola | nucleus | 18.0 | 33.95 |
| Bra002709.1-P | Field mustard | nucleus | 18.0 | 33.95 |
| OQU84486 | Sorghum | nucleus | 31.63 | 33.33 |
| EER90145 | Sorghum | nucleus | 29.93 | 32.71 |
| EES14798 | Sorghum | nucleus | 22.14 | 31.16 |
| KXG19836 | Sorghum | nucleus | 21.17 | 21.17 |
| EES07342 | Sorghum | nucleus | 19.95 | 20.2 |
| EER94860 | Sorghum | nucleus | 17.27 | 17.19 |
| EES14176 | Sorghum | nucleus | 19.71 | 16.53 |
| EER99873 | Sorghum | nucleus | 16.3 | 16.22 |
Protein Annotations
| MapMan:15.5.1.2 | EntrezGene:8076389 | UniProt:C5Z8J7 | InterPro:CCT_domain | EnsemblPlants:EER88227 | ProteinID:EER88227 |
| ProteinID:EER88227.1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009909 | GO:GO:0009987 | GO:GO:0045892 | GO:GO:0048571 | GO:GO:0048572 |
| GO:GO:0048576 | GO:GO:0048579 | InterPro:IPR000315 | InterPro:IPR010402 | PFAM:PF00643 | PFAM:PF06203 |
| PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF38 | SMART:SM00336 | EnsemblPlantsGene:SORBI_3010G115800 |
| UniParc:UPI0001A89541 | RefSeq:XP_002436860.1 | InterPro:Znf_B-box | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr10:+:12353901..12355900
Molecular Weight (calculated)
44252.6 Da
IEP (calculated)
5.278
GRAVY (calculated)
-0.300
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: MNYNFSSNAL DEEEVAGRGG EGGSCAAAPA WARPCDGCRA APSVVYCHAD AAYLCASCDV RVHAANRVAS RHERVRVCEA CERAPAVLAC RADAAALCVV
101: CDAQVHSANP LAGRHQRVPV LPLPVAAIPA ASVLAEAAAT AVAVGDKQEE EVDSWLLLTN TKDPVSDNNN CNCSSSSNNN ISSSNTSTFY ADVDEYFDLV
201: GYNSYCDNHI NSNPKQYGMQ ERQQQQQLLL QKEFGDKEGS EHVVPASQVA MANEQQQSGY GVIGVEQAAS MTAAVSAYTD SITNSISFSS SMEVGIVPDN
301: MATTTDMPNS GILLTPAEAI SLFSSGSSLQ MPLHLTSMDR EARVLRYKEK KKSRKFAKTI RYATRKTYAE ARPRIKGRFA KRSSDMEIEV DQMFSSAALS
401: SDGSYGTVLW F
101: CDAQVHSANP LAGRHQRVPV LPLPVAAIPA ASVLAEAAAT AVAVGDKQEE EVDSWLLLTN TKDPVSDNNN CNCSSSSNNN ISSSNTSTFY ADVDEYFDLV
201: GYNSYCDNHI NSNPKQYGMQ ERQQQQQLLL QKEFGDKEGS EHVVPASQVA MANEQQQSGY GVIGVEQAAS MTAAVSAYTD SITNSISFSS SMEVGIVPDN
301: MATTTDMPNS GILLTPAEAI SLFSSGSSLQ MPLHLTSMDR EARVLRYKEK KKSRKFAKTI RYATRKTYAE ARPRIKGRFA KRSSDMEIEV DQMFSSAALS
401: SDGSYGTVLW F
001: MLKEESNESG TWARACDTCR SAACTVYCEA DSAYLCTTCD ARVHAANRVA SRHERVRVCQ SCESAPAAFL CKADAASLCT ACDAEIHSAN PLARRHQRVP
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF
Arabidopsis Description
COL2Zinc finger protein CONSTANS-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q96502]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.