Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G28050.1 | KXG39763 | AT3G48590.1 | 17138697 |
| AT1G28050.1 | KXG39763 | AT5G63470.1 | 17138697 |
| AT2G33500.1 | KXG27287 | AT1G71230.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d031662_P001 | Maize | nucleus | 86.94 | 87.12 |
| Os08t0536300-01 | Rice | nucleus | 72.24 | 72.54 |
| TraesCS7D01G264300.1 | Wheat | nucleus | 72.04 | 72.19 |
| TraesCS7B01G161500.1 | Wheat | nucleus | 71.84 | 72.13 |
| TraesCS7A01G263500.1 | Wheat | nucleus | 71.43 | 71.43 |
| HORVU0Hr1G021050.5 | Barley | cytosol | 54.49 | 63.12 |
| GSMUA_Achr6P06130_001 | Banana | nucleus | 40.61 | 44.72 |
| CDY15696 | Canola | nucleus | 24.69 | 41.87 |
| Bra030070.1-P | Field mustard | nucleus | 24.69 | 39.29 |
| CDY11755 | Canola | nucleus | 31.02 | 38.68 |
| CDY68819 | Canola | nucleus | 30.2 | 38.24 |
| CDY30385 | Canola | nucleus | 30.2 | 38.24 |
| CDY66639 | Canola | nucleus | 30.0 | 36.48 |
| Bra041077.1-P | Field mustard | nucleus | 30.2 | 36.27 |
| VIT_01s0146g00360.t01 | Wine grape | nucleus | 34.69 | 36.25 |
| Bra010908.1-P | Field mustard | nucleus | 30.61 | 35.89 |
| Solyc05g024010.2.1 | Tomato | nucleus | 32.45 | 35.18 |
| CDX90119 | Canola | nucleus | 30.0 | 35.08 |
| VIT_14s0068g01380.t01 | Wine grape | nucleus | 32.04 | 34.97 |
| PGSC0003DMT400065377 | Potato | nucleus | 32.24 | 34.88 |
| AT1G28050.1 | Thale cress | nucleus | 30.61 | 34.64 |
| AT2G33500.1 | Thale cress | nucleus | 28.16 | 34.33 |
| KRH06865 | Soybean | nucleus | 26.53 | 34.12 |
| KRG94656 | Soybean | nucleus | 26.12 | 33.25 |
| CDY48428 | Canola | nucleus | 18.16 | 32.96 |
| EER99873 | Sorghum | nucleus | 22.65 | 26.88 |
| EER94860 | Sorghum | nucleus | 22.04 | 26.15 |
| KXG19836 | Sorghum | nucleus | 21.84 | 26.03 |
| EES12446 | Sorghum | nucleus | 17.35 | 25.84 |
| EES05406 | Sorghum | nucleus | 16.94 | 24.7 |
| EES07342 | Sorghum | nucleus | 20.2 | 24.38 |
| EER90145 | Sorghum | nucleus | 16.53 | 21.54 |
| OQU84486 | Sorghum | nucleus | 15.92 | 20.0 |
| OQU85473 | Sorghum | nucleus | 14.9 | 19.95 |
| EER88227 | Sorghum | nucleus | 16.53 | 19.71 |
| EES14798 | Sorghum | nucleus | 10.82 | 18.15 |
Protein Annotations
| MapMan:15.5.1.2 | EntrezGene:8060596 | UniProt:C5YHP5 | InterPro:CCT_domain | EnsemblPlants:EES14176 | ProteinID:EES14176 |
| ProteinID:EES14176.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:IPR010402 | PFAM:PF06203 |
| PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31717 | PANTHER:PTHR31717:SF20 | SMART:SM00336 | EnsemblPlantsGene:SORBI_3007G189800 |
| unigene:Sbi.11936 | UniParc:UPI0001A87D37 | RefSeq:XP_002444681.1 | InterPro:Znf_B-box | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr7:+:62271821..62276205
Molecular Weight (calculated)
51756.6 Da
IEP (calculated)
6.942
GRAVY (calculated)
-0.480
Length
490 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSGGGGGGG GGGGGQQWPC DYCGEAAAAL HCRADAARLC VACDRHVHAA NALSRKHVRV PLCAGCAARP AAARVSPVPG ADPAFLCAGC CDDAASAAVR
101: VPVEGFSGCP SAAELAASWG LDLRRAEEGK DGAGGDIDDG DPFLSVLDYS VLGVAVDPDL RDLYVPCDPP RVPAPDAAGA RPLRGQALCD QLAEMARRET
201: DTAHAHPHSD LSPRTPRRTS AASGGRLPPG KMSPPAAMPT HHPPPAAVQE VPLPYTSLLM MASANCADLI GGADRVGDDD EQLLWDCAAP SVPPTQIWDF
301: NLGRSRDHDE KSALEVGYGS NHGGFMIKSY SDMLKEISSG TTKDLEDIYD SRYCSTAEDI MSSNICQLSS KNVSTASNKR KLSSCASTID GPTTSGNHVP
401: TSGPALTREI SFGDQTVSTP AAERPAVRID SETLAQNRDS AMQRYREKKK NRRYEKHIRY ESRKLRADTR KRVKGRFVKS TEALNAGYGG
101: VPVEGFSGCP SAAELAASWG LDLRRAEEGK DGAGGDIDDG DPFLSVLDYS VLGVAVDPDL RDLYVPCDPP RVPAPDAAGA RPLRGQALCD QLAEMARRET
201: DTAHAHPHSD LSPRTPRRTS AASGGRLPPG KMSPPAAMPT HHPPPAAVQE VPLPYTSLLM MASANCADLI GGADRVGDDD EQLLWDCAAP SVPPTQIWDF
301: NLGRSRDHDE KSALEVGYGS NHGGFMIKSY SDMLKEISSG TTKDLEDIYD SRYCSTAEDI MSSNICQLSS KNVSTASNKR KLSSCASTID GPTTSGNHVP
401: TSGPALTREI SFGDQTVSTP AAERPAVRID SETLAQNRDS AMQRYREKKK NRRYEKHIRY ESRKLRADTR KRVKGRFVKS TEALNAGYGG
001: MSSSERVPCD FCGERTAVLF CRADTAKLCL PCDQQVHTAN LLSRKHVRSQ ICDNCGNEPV SVRCFTDNLI LCQECDWDVH GSCSVSDAHV RSAVEGFSGC
101: PSALELAALW GLDLEQGRKD EENQVPMMAM MMDNFGMQLD SWVLGSNELI VPSDTTFKKR GSCGSSCGRY KQVLCKQLEE LLKSGVVGGD GDDGDRDRDC
201: DREGACDGDG DGEAGEGLMV PEMSERLKWS RDVEEINGGG GGGVNQQWNA TTTNPSGGQS SQIWDFNLGQ SRGPEDTSRV EAAYVGKGAA SSFTINNFVD
301: HMNETCSTNV KGVKEIKKDD YKRSTSGQVQ PTKSESNNRP ITFGSEKGSN SSSDLHFTEH IAGTSCKTTR LVATKADLER LAQNRGDAMQ RYKEKRKTRR
401: YDKTIRYESR KARADTRLRV RGRFVKASEA PYP
101: PSALELAALW GLDLEQGRKD EENQVPMMAM MMDNFGMQLD SWVLGSNELI VPSDTTFKKR GSCGSSCGRY KQVLCKQLEE LLKSGVVGGD GDDGDRDRDC
201: DREGACDGDG DGEAGEGLMV PEMSERLKWS RDVEEINGGG GGGVNQQWNA TTTNPSGGQS SQIWDFNLGQ SRGPEDTSRV EAAYVGKGAA SSFTINNFVD
301: HMNETCSTNV KGVKEIKKDD YKRSTSGQVQ PTKSESNNRP ITFGSEKGSN SSSDLHFTEH IAGTSCKTTR LVATKADLER LAQNRGDAMQ RYKEKRKTRR
401: YDKTIRYESR KARADTRLRV RGRFVKASEA PYP
Arabidopsis Description
COL15Zinc finger protein CONSTANS-LIKE 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7E8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.