Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11755 | Canola | nucleus | 69.75 | 76.84 |
| CDY15696 | Canola | nucleus | 50.35 | 75.43 |
| Bra010908.1-P | Field mustard | nucleus | 72.75 | 75.36 |
| CDX90119 | Canola | nucleus | 72.75 | 75.18 |
| CDY30385 | Canola | nucleus | 66.74 | 74.68 |
| CDY68819 | Canola | nucleus | 66.51 | 74.42 |
| Bra030070.1-P | Field mustard | nucleus | 52.42 | 73.7 |
| CDY66639 | Canola | nucleus | 68.13 | 73.2 |
| Bra041077.1-P | Field mustard | nucleus | 68.36 | 72.55 |
| CDY48428 | Canola | nucleus | 42.96 | 68.89 |
| AT2G33500.1 | Thale cress | nucleus | 58.66 | 63.18 |
| VIT_01s0146g00360.t01 | Wine grape | nucleus | 50.12 | 46.27 |
| Solyc05g024010.2.1 | Tomato | nucleus | 44.8 | 42.92 |
| PGSC0003DMT400065377 | Potato | nucleus | 44.57 | 42.6 |
| VIT_14s0068g01380.t01 | Wine grape | nucleus | 42.03 | 40.53 |
| KRH06865 | Soybean | nucleus | 30.25 | 34.38 |
| KRG94656 | Soybean | nucleus | 30.48 | 34.29 |
| GSMUA_Achr10P... | Banana | nucleus | 35.8 | 33.84 |
| AT2G47890.1 | Thale cress | nucleus | 24.48 | 31.93 |
| EES14176 | Sorghum | nucleus | 34.64 | 30.61 |
| Os09t0509700-01 | Rice | nucleus | 30.02 | 30.16 |
| Zm00001d031662_P001 | Maize | nucleus | 33.03 | 29.24 |
| GSMUA_Achr6P06130_001 | Banana | nucleus | 30.02 | 29.21 |
| GSMUA_Achr11P... | Banana | nucleus | 34.64 | 28.96 |
| TraesCS7D01G264300.1 | Wheat | nucleus | 31.41 | 27.81 |
| TraesCS7B01G161500.1 | Wheat | nucleus | 31.18 | 27.66 |
| TraesCS7A01G263500.1 | Wheat | nucleus | 31.18 | 27.55 |
| AT3G07650.1 | Thale cress | nucleus | 22.86 | 26.61 |
| AT5G48250.1 | Thale cress | nucleus | 21.71 | 25.2 |
| AT2G24790.1 | Thale cress | nucleus, plastid | 17.09 | 25.17 |
| AT4G15250.1 | Thale cress | nucleus | 18.24 | 23.94 |
| AT5G24930.1 | Thale cress | nucleus | 18.71 | 22.38 |
| AT3G21880.2 | Thale cress | nucleus | 18.94 | 22.28 |
| AT5G15840.1 | Thale cress | nucleus | 18.94 | 21.98 |
| AT3G02380.1 | Thale cress | nucleus | 17.09 | 21.33 |
| AT5G15850.1 | Thale cress | nucleus | 17.32 | 21.13 |
| HORVU0Hr1G021050.5 | Barley | cytosol | 20.32 | 20.8 |
| AT5G57660.1 | Thale cress | nucleus, plastid | 16.4 | 20.0 |
| AT1G68190.2 | Thale cress | extracellular, golgi, vacuole | 17.55 | 19.74 |
Protein Annotations
| MapMan:15.5.1.2 | EntrezGene:839698 | ProteinID:AAG51489.1 | ProteinID:AEE30906.1 | ArrayExpress:AT1G28050 | EnsemblPlantsGene:AT1G28050 |
| RefSeq:AT1G28050 | TAIR:AT1G28050 | RefSeq:AT1G28050-TAIR-G | EnsemblPlants:AT1G28050.1 | TAIR:AT1G28050.1 | EMBL:AY037206 |
| EMBL:BT002681 | InterPro:CCT_domain | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0046872 | InterPro:IPR000315 | InterPro:IPR010402 | RefSeq:NP_174126.1 | PFAM:PF06203 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50119 | PFscan:PS51017 |
| PANTHER:PTHR31717 | PANTHER:PTHR31717:SF20 | UniProt:Q9C7E8 | SMART:SM00336 | UniParc:UPI000000BD8E | InterPro:Znf_B-box |
| SEG:seg | : | : | : | : | : |
Description
COL15Zinc finger protein CONSTANS-LIKE 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7E8]
Coordinates
chr1:-:9775522..9778043
Molecular Weight (calculated)
47608.5 Da
IEP (calculated)
5.978
GRAVY (calculated)
-0.723
Length
433 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSERVPCD FCGERTAVLF CRADTAKLCL PCDQQVHTAN LLSRKHVRSQ ICDNCGNEPV SVRCFTDNLI LCQECDWDVH GSCSVSDAHV RSAVEGFSGC
101: PSALELAALW GLDLEQGRKD EENQVPMMAM MMDNFGMQLD SWVLGSNELI VPSDTTFKKR GSCGSSCGRY KQVLCKQLEE LLKSGVVGGD GDDGDRDRDC
201: DREGACDGDG DGEAGEGLMV PEMSERLKWS RDVEEINGGG GGGVNQQWNA TTTNPSGGQS SQIWDFNLGQ SRGPEDTSRV EAAYVGKGAA SSFTINNFVD
301: HMNETCSTNV KGVKEIKKDD YKRSTSGQVQ PTKSESNNRP ITFGSEKGSN SSSDLHFTEH IAGTSCKTTR LVATKADLER LAQNRGDAMQ RYKEKRKTRR
401: YDKTIRYESR KARADTRLRV RGRFVKASEA PYP
101: PSALELAALW GLDLEQGRKD EENQVPMMAM MMDNFGMQLD SWVLGSNELI VPSDTTFKKR GSCGSSCGRY KQVLCKQLEE LLKSGVVGGD GDDGDRDRDC
201: DREGACDGDG DGEAGEGLMV PEMSERLKWS RDVEEINGGG GGGVNQQWNA TTTNPSGGQS SQIWDFNLGQ SRGPEDTSRV EAAYVGKGAA SSFTINNFVD
301: HMNETCSTNV KGVKEIKKDD YKRSTSGQVQ PTKSESNNRP ITFGSEKGSN SSSDLHFTEH IAGTSCKTTR LVATKADLER LAQNRGDAMQ RYKEKRKTRR
401: YDKTIRYESR KARADTRLRV RGRFVKASEA PYP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.