Factsheet for GSMUA_Achr11P08470_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P10450_001
GSMUA_Achr6P03790_001
GSMUA_Achr6P16620_001
GSMUA_Achr7P08700_001
GSMUA_Achr9P13880_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28050.1	GSMUA_Achr1P10450_001	AT3G21150.1	21798944
AT1G28050.1	GSMUA_Achr6P03790_001	AT3G21150.1	21798944
AT1G28050.1	GSMUA_Achr7P08700_001	AT3G21150.1	21798944
AT1G28050.1	GSMUA_Achr9P13880_001	AT3G21150.1	21798944
AT1G28050.1	GSMUA_AchrUn_...	AT3G21150.1	21798944
AT1G28050.1	GSMUA_Achr10P...	AT3G48590.1	17138697
AT1G28050.1	GSMUA_Achr6P16620_001	AT3G48590.1	17138697
AT1G28050.1	GSMUA_Achr10P...	AT5G63470.1	17138697
AT1G28050.1	GSMUA_Achr6P16620_001	AT5G63470.1	17138697
AT2G33500.1	GSMUA_Achr10P...	AT1G71230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	64.29	72.71
GSMUA_Achr6P06130_001	Banana	nucleus	39.19	45.62
CDY15696	Canola	nucleus	23.75	42.56
GSMUA_Achr6P13590_001	Banana	cytosol, mitochondrion, nucleus	6.95	40.45
Bra030070.1-P	Field mustard	nucleus	23.94	40.26
CDY68819	Canola	nucleus	28.96	38.76
CDY11755	Canola	nucleus	29.34	38.68
CDY30385	Canola	nucleus	28.76	38.5
CDY66639	Canola	nucleus	29.15	37.47
Bra041077.1-P	Field mustard	nucleus	29.15	37.01
Bra010908.1-P	Field mustard	nucleus	29.15	36.12
VIT_01s0146g00360.t01	Wine grape	nucleus	32.63	36.03
Solyc05g024010.2.1	Tomato	nucleus	31.27	35.84
CDX90119	Canola	nucleus	28.96	35.8
PGSC0003DMT400065377	Potato	nucleus	30.89	35.32
AT1G28050.1	Thale cress	nucleus	28.96	34.64
AT2G33500.1	Thale cress	nucleus	26.64	34.33
VIT_14s0068g01380.t01	Wine grape	nucleus	29.73	34.3
KRH06865	Soybean	nucleus	24.9	33.86
KRG94656	Soybean	nucleus	25.1	33.77
CDY48428	Canola	nucleus	15.64	30.0
GSMUA_Achr7P16370_001	Banana	nucleus	14.09	25.0
GSMUA_Achr3P08880_001	Banana	nucleus	19.3	24.51
GSMUA_Achr10P...	Banana	nucleus	14.86	24.14
GSMUA_AchrUn_...	Banana	nucleus	14.67	23.82
GSMUA_Achr5P22460_001	Banana	nucleus	17.95	23.79
GSMUA_Achr3P04260_001	Banana	nucleus	18.73	23.1
GSMUA_Achr9P19630_001	Banana	nucleus	14.67	22.82
GSMUA_Achr2P04960_001	Banana	nucleus	11.78	22.68
GSMUA_Achr5P04270_001	Banana	nucleus	18.34	22.51
GSMUA_Achr11P...	Banana	nucleus	14.86	22.13
GSMUA_Achr1P23420_001	Banana	nucleus	14.29	22.09
GSMUA_Achr9P12860_001	Banana	nucleus	17.57	21.82
GSMUA_Achr7P20150_001	Banana	nucleus	17.18	21.6
GSMUA_Achr10P...	Banana	nucleus	16.02	20.7
GSMUA_Achr4P18680_001	Banana	nucleus	3.47	20.45
GSMUA_Achr9P22690_001	Banana	nucleus, plastid	10.04	17.87
GSMUA_Achr3P28130_001	Banana	nucleus	9.65	17.86

Protein Annotations

MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	EnsemblPlantsGene:GSMUA_Achr11G08470_001	EnsemblPlants:GSMUA_Achr11P08470_001
EnsemblPlants:GSMUA_Achr11T08470_001	InterPro:IPR000315	InterPro:IPR010402	UniProt:M0RQH7	PFAM:PF00643	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF20	SMART:SM00336	UniParc:UPI000294E76F
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

Putative Zinc finger protein CONSTANS-LIKE 14 [Source:GMGC_GENE;Acc:GSMUA_Achr11G08470_001]

Coordinates

chr11:+:6560374..6564595

Molecular Weight (calculated)

56725.1 Da

IEP (calculated)

6.810

GRAVY (calculated)

-0.508

Length

518 amino acids

Sequence
(BLAST)

001: MGVEGGAVLH KWWASAFPSR FRELKVSGRV LLLIRRRRLV ENDSCGERLV LETGMAEENG GVDGRRGVGC EYCGDAAATL FCRADAARLC VACDRHVHAA
101: NALSQKHVRS PICDNCGSQP AAARCAADGL ALCADCDWDS HGGGGDGGGG GHQHHHTRVP IDGFSGCPTA LELAASWGLD LSVKEASHPP PLNPMPDQLF
201: SNWSTMDSTL DVDPLFRDLY VPCAPKISSM VRRQKNPQSK HPLFQQLMEL AKTELTASTA CDLSPSTPCQ TGRGHEELRE SQPMPYTSLL MLAPTELKGT
301: DRLVEEEDLL WDCGPPEQPA QIWDFNLGRF RDQKESYALE FAYGTNNEGF MIKSYNDLLK ENPFATTKVL EDIGDANCPS NDDFLSPNVR HMQSQTLSTI
401: NTTAKWKHSS NYPAVKGPTA TGNNMSTMIR PLVASSHEHG SAGGAKQISF GEPLIGNEVV KEIKKLDNEL LVKNRGDAML RYDKRIRYES RKARADTRKR
501: VKGRFVKSTE ALDVGNGG

Best Arabidopsis Sequence Match ( AT2G33500.2 )
(BLAST)

001: MGTSTTESVV ACEFCGERTA VLFCRADTAK LCLPCDQHVH SANLLSRKHV RSQICDNCSK EPVSVRCFTD NLVLCQECDW DVHGSCSSSA THERSAVEGF
101: SGCPSVLELA AVWGIDLKGK KKEDDEDELT KNFGMGLDSW GSGSNIVQEL IVPYDVSCKK QSFSFGRSKQ VVFEQLELLK RGFVEGEGEI MVPEGINGGG
201: SISQPSPTTS FTSLLMSQSL CGNGMQWNAT NHSTGQNTQI WDFNLGQSRN PDEPSPVETK GSTFTFNNVT HLKNDTRTTN MNAFKESYQE DSVHSTSTKG
301: QETSKSNNIP AAIHSHKSSN DSCGLHCTEH IAITSNRATR LVAVTNADLE QMAQNRDNAM QRYKEKKKTR RYDKTIRYET RKARAETRLR VKGRFVKATD
401: P

Arabidopsis Description

COL14Zinc finger protein CONSTANS-LIKE 14 [Source:UniProtKB/Swiss-Prot;Acc:O22800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.