Factsheet for GSMUA_Achr5P04270_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr2P18060_001
GSMUA_Achr4P19000_001
GSMUA_Achr5P14120_001
GSMUA_Achr8P14660_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48250.1	GSMUA_Achr11P...	AT1G32230.1	19548978
AT5G48250.1	GSMUA_Achr2P18060_001	AT1G32230.1	19548978
AT5G48250.1	GSMUA_Achr4P19000_001	AT1G32230.1	19548978
AT5G48250.1	GSMUA_Achr5P14120_001	AT1G32230.1	19548978
AT5G48250.1	GSMUA_Achr8P14660_001	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P04260_001	Banana	nucleus	75.12	75.48
GSMUA_Achr9P12860_001	Banana	nucleus	72.75	73.62
GSMUA_Achr7P20150_001	Banana	nucleus	63.03	64.56
GSMUA_Achr10P...	Banana	nucleus	59.0	62.09
GSMUA_Achr5P22460_001	Banana	nucleus	54.5	58.82
VIT_12s0057g01350.t01	Wine grape	nucleus	56.16	57.11
VIT_00s0194g00070.t01	Wine grape	nucleus	55.21	56.28
KRG89998	Soybean	nucleus	53.32	55.01
KRH17709	Soybean	nucleus	52.37	54.03
KRH72628	Soybean	nucleus	51.42	53.58
KRH16989	Soybean	nucleus	51.42	52.8
Bra001264.1-P	Field mustard	nucleus	43.6	52.42
AT3G07650.1	Thale cress	nucleus	45.97	52.15
CDX86318	Canola	nucleus	43.84	51.68
CDY07979	Canola	nucleus	42.89	51.42
CDX85321	Canola	nucleus	43.36	50.97
Bra037499.1-P	Field mustard	nucleus	41.47	50.72
CDY35952	Canola	nucleus	44.31	50.68
AT5G48250.1	Thale cress	nucleus	44.79	50.67
GSMUA_Achr6P13590_001	Banana	cytosol, mitochondrion, nucleus	10.66	50.56
CDY28029	Canola	nucleus	44.55	50.54
CDY48743	Canola	nucleus	41.71	50.29
Bra040020.1-P	Field mustard	nucleus	43.6	50.27
Bra020709.1-P	Field mustard	nucleus	41.71	50.14
PGSC0003DMT400013624	Potato	nucleus	49.05	50.12
CDY22125	Canola	nucleus	43.36	50.0
CDY05691	Canola	nucleus	40.76	49.57
Solyc05g020020.2.1	Tomato	nucleus	47.63	49.02
Bra029666.1-P	Field mustard	nucleus	44.79	48.96
PGSC0003DMT400044878	Potato	nucleus	47.16	48.42
Solyc07g045180.2.1	Tomato	nucleus	47.63	48.09
CDX74034	Canola	nucleus	44.08	47.69
PGSC0003DMT400074143	Potato	nucleus	45.97	47.55
Solyc12g006240.1.1	Tomato	nucleus	26.54	41.64
GSMUA_Achr4P18680_001	Banana	nucleus	6.64	31.82
GSMUA_Achr7P16370_001	Banana	nucleus	18.96	27.4
GSMUA_Achr10P...	Banana	nucleus	19.43	25.71
GSMUA_Achr2P04960_001	Banana	nucleus	15.4	24.16
GSMUA_AchrUn_...	Banana	nucleus	18.01	23.82
GSMUA_Achr9P19630_001	Banana	nucleus	18.72	23.72
GSMUA_Achr1P23420_001	Banana	nucleus	18.72	23.58
GSMUA_Achr11P...	Banana	nucleus	18.96	22.99
GSMUA_Achr6P06130_001	Banana	nucleus	23.22	22.02
GSMUA_Achr10P...	Banana	nucleus	22.99	21.18
GSMUA_Achr3P28130_001	Banana	nucleus	13.74	20.71
GSMUA_Achr3P08880_001	Banana	nucleus	19.67	20.34
GSMUA_Achr9P22690_001	Banana	nucleus, plastid	13.27	19.24
GSMUA_Achr11P...	Banana	nucleus	22.51	18.34

Protein Annotations

MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	EnsemblPlantsGene:GSMUA_Achr5G04270_001	EnsemblPlants:GSMUA_Achr5P04270_001
EnsemblPlants:GSMUA_Achr5T04270_001	InterPro:IPR000315	InterPro:IPR010402	UniProt:M0SVK6	PFAM:PF06203	PFscan:PS50119
PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF39	SMART:SM00336	UniParc:UPI000296750E	InterPro:Znf_B-box
SEG:seg	:	:	:	:	:

Description

Putative Zinc finger protein CONSTANS-LIKE 9 [Source:GMGC_GENE;Acc:GSMUA_Achr5G04270_001]

Coordinates

chr5:+:3105056..3109831

Molecular Weight (calculated)

46200.6 Da

IEP (calculated)

5.617

GRAVY (calculated)

-0.513

Length

422 amino acids

Sequence
(BLAST)

001: MNHLCDFCGE QRSIIYCRSD AASLCLSCDR NVHSANALSR RHLRTLLCDR CSAQPAVIRC IEESVSLCKN CDWNSHDGSG VASGHKRQTI NCYSGCPSAA
101: ELSRILPFFQ EFPPVAEPDC EKGLGLMTIS ENNISNCWGR PESNSTLGIS SEGKMKDPIV VDKLNPLTGS SSGPAICPLP STADQTAGSV DSTIPKLDCV
201: GTKDFEFSKD DFCEDFNVND VDMTFQSYEH LFGVSHNQIN HIFDDDDGID SFFDLRETSA ANSNHQDEFF GEASSAGQPN PMLATRSNAV SADSVMSNQG
301: KNADSRLFIS ASHAHFSLSL SFSGLTGESG AGDYQDCGGS SVPFRGEPPW FPADPENSQL PTASRDSAVM RYKEKKKARK FEKKIRYASR KAMADVRRRV
401: KGRFVKAGEA YDYDPLAQTR SF

Best Arabidopsis Sequence Match ( AT3G07650.3 )
(BLAST)

001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY

Arabidopsis Description

COL9AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.