Factsheet for Solyc07g045180.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g005270.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48250.1	Solyc08g005270.2.1	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044878	Potato	nucleus	91.39	92.94
Solyc05g020020.2.1	Tomato	nucleus	66.27	67.56
Solyc12g006240.1.1	Tomato	nucleus	41.39	64.31
KRG89998	Soybean	nucleus	59.33	60.64
KRH17709	Soybean	nucleus	58.85	60.15
VIT_12s0057g01350.t01	Wine grape	nucleus	58.13	58.55
KRH72628	Soybean	nucleus	56.7	58.52
Bra001264.1-P	Field mustard	nucleus	48.09	57.27
KRH16989	Soybean	nucleus	56.22	57.18
CDY35952	Canola	nucleus	49.76	56.37
CDY07979	Canola	nucleus	47.37	56.25
AT3G07650.1	Thale cress	nucleus	50.0	56.18
VIT_00s0194g00070.t01	Wine grape	nucleus	55.26	55.8
CDY28029	Canola	nucleus	49.52	55.65
CDY22125	Canola	nucleus	48.56	55.46
Bra040020.1-P	Field mustard	nucleus	48.33	55.19
CDX85321	Canola	nucleus	47.37	55.15
CDY48743	Canola	nucleus	46.17	55.14
Bra020709.1-P	Field mustard	nucleus	45.93	54.7
CDX86318	Canola	nucleus	46.41	54.19
Bra029666.1-P	Field mustard	nucleus	49.76	53.89
Bra037499.1-P	Field mustard	nucleus	44.02	53.33
CDY05691	Canola	nucleus	44.26	53.31
AT5G48250.1	Thale cress	nucleus	47.37	53.08
CDX74034	Canola	nucleus	48.09	51.54
Os06t0298200-01	Rice	nucleus	49.28	50.49
KXG19836	Sorghum	nucleus	49.04	49.88
TraesCS7A01G218600.1	Wheat	nucleus	47.13	49.75
TraesCS7D01G220300.1	Wheat	nucleus	47.13	49.75
Os02t0724000-01	Rice	nucleus	48.33	49.63
GSMUA_Achr3P04260_001	Banana	nucleus	49.76	49.52
GSMUA_Achr9P12860_001	Banana	nucleus	48.33	48.44
GSMUA_Achr10P...	Banana	nucleus	46.41	48.38
HORVU6Hr1G071950.2	Barley	nucleus	44.02	48.17
GSMUA_Achr7P20150_001	Banana	nucleus	47.37	48.06
TraesCS6B01G315400.1	Wheat	nucleus	44.74	47.95
TraesCS6A01G286400.3	Wheat	nucleus	44.74	47.95
GSMUA_Achr5P04270_001	Banana	nucleus	48.09	47.63
TraesCS6D01G267100.1	Wheat	nucleus	44.5	47.45
EES07342	Sorghum	nucleus	45.45	46.8
GSMUA_Achr5P22460_001	Banana	nucleus	43.54	46.55
Zm00001d045804_P003	Maize	nucleus	48.33	46.33
TraesCS7B01G125500.1	Wheat	cytosol, nucleus, plastid	37.08	45.99
Zm00001d051684_P007	Maize	nucleus	44.26	45.57
Zm00001d017885_P001	Maize	nucleus	40.43	36.66
Solyc05g046040.1.1	Tomato	nucleus	34.45	34.37
Solyc02g089500.2.1	Tomato	nucleus	9.57	28.17
Solyc12g096500.1.1	Tomato	nucleus	20.1	23.46
Solyc08g006530.2.1	Tomato	nucleus	19.14	22.92
Solyc09g074560.2.1	Tomato	nucleus	20.33	22.79
Solyc02g089540.2.1	Tomato	nucleus	20.57	21.99
Solyc04g007470.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	24.88	21.89
Solyc05g024010.2.1	Tomato	nucleus	23.21	21.46
Solyc02g089520.1.1	Tomato	nucleus	19.38	19.8
Solyc07g006630.2.1	Tomato	nucleus	17.94	19.43

Protein Annotations

MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402
UniProt:K4CES5	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31717
PANTHER:PTHR31717:SF39	SMART:SM00336	EnsemblPlantsGene:Solyc07g045180.2	EnsemblPlants:Solyc07g045180.2.1	UniParc:UPI000276CA05	InterPro:Znf_B-box
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:+:58290763..58297475

Molecular Weight (calculated)

46135.8 Da

IEP (calculated)

5.321

GRAVY (calculated)

-0.524

Length

418 amino acids

Sequence
(BLAST)

001: MGYICEYCGE QRSIVYCRSD SACLCLSCDR NIHSANALSQ RHSRTLVCER CNSQPAIFRC VEERVSLCQN CDWLAHASSG TCSTHKRQAL SCYTGCPSAV
101: ELSTIWSFIL GDPSVCDSTC EQGMGSMSIT DCQPGDSQHP QVKEKSQDIS SDEAKDLHNL VKSAPFMGSS MPSLDNELPN VELLVASTNL TWSKVKNSGT
201: KGYNDPFYDD FNMDEVDLSI ENYKELFGVS IDNCDQLFKN EDIDDFFGMK DMSVAESSFQ GVNAVEVIVD NGKAPGSAVG KVNAVKSACS NAASAESMMS
301: CKTEPPTLCF AMQQSSFSFS NLTGESNAGD CQDCGASSML RMGEPSWHPP CPESSMPSTS RSDAVSRYKE KKKTRQFDKR VRYVSRKARA EVRRRVKGRF
401: VKDGDAYDYD PLHQTRSY

Best Arabidopsis Sequence Match ( AT3G07650.3 )
(BLAST)

001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY

Arabidopsis Description

COL9AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.