Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G48250.1 | CDY22597 | AT1G32230.1 | 19548978 |
| AT5G48250.1 | CDY41739 | AT1G32230.1 | 19548978 |
| AT5G48250.1 | CDY43007 | AT1G32230.1 | 19548978 |
| AT5G48250.1 | CDY60257 | AT1G32230.1 | 19548978 |
| AT5G48250.1 | CDY67026 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037499.1-P | Field mustard | nucleus | 96.37 | 100.0 |
| CDX85321 | Canola | nucleus | 96.37 | 96.1 |
| CDY48743 | Canola | nucleus | 81.56 | 83.43 |
| CDY05691 | Canola | nucleus | 78.77 | 81.27 |
| AT5G48250.1 | Thale cress | nucleus | 80.73 | 77.48 |
| CDY07979 | Canola | nucleus | 65.64 | 66.76 |
| CDY28029 | Canola | nucleus | 68.16 | 65.59 |
| CDY35952 | Canola | nucleus | 67.6 | 65.58 |
| CDY22125 | Canola | nucleus | 66.76 | 65.3 |
| CDX74034 | Canola | nucleus | 67.04 | 61.54 |
| KRH17709 | Soybean | nucleus | 59.5 | 52.08 |
| KRG89998 | Soybean | nucleus | 59.5 | 52.08 |
| VIT_12s0057g01350.t01 | Wine grape | nucleus | 60.34 | 52.05 |
| KRH72628 | Soybean | nucleus | 58.38 | 51.6 |
| KRH16989 | Soybean | nucleus | 58.94 | 51.34 |
| PGSC0003DMT400074143 | Potato | nucleus | 56.15 | 49.26 |
| VIT_00s0194g00070.t01 | Wine grape | nucleus | 55.87 | 48.31 |
| Os02t0724000-01 | Rice | nucleus | 53.35 | 46.93 |
| Os06t0298200-01 | Rice | nucleus | 53.35 | 46.81 |
| PGSC0003DMT400044878 | Potato | nucleus | 53.35 | 46.47 |
| KXG19836 | Sorghum | nucleus | 53.35 | 46.47 |
| Solyc07g045180.2.1 | Tomato | nucleus | 54.19 | 46.41 |
| HORVU6Hr1G071950.2 | Barley | nucleus | 49.16 | 46.07 |
| PGSC0003DMT400013624 | Potato | nucleus | 53.07 | 46.0 |
| Solyc05g020020.2.1 | Tomato | nucleus | 52.51 | 45.85 |
| TraesCS7A01G218600.1 | Wheat | nucleus | 50.28 | 45.45 |
| TraesCS7D01G220300.1 | Wheat | nucleus | 50.28 | 45.45 |
| TraesCS6A01G286400.3 | Wheat | nucleus | 49.44 | 45.38 |
| GSMUA_Achr3P04260_001 | Banana | nucleus | 53.07 | 45.24 |
| EES07342 | Sorghum | nucleus | 51.12 | 45.07 |
| TraesCS6D01G267100.1 | Wheat | nucleus | 49.16 | 44.9 |
| GSMUA_Achr7P20150_001 | Banana | nucleus | 51.4 | 44.66 |
| TraesCS6B01G315400.1 | Wheat | nucleus | 48.32 | 44.36 |
| GSMUA_Achr5P22460_001 | Banana | nucleus | 48.04 | 43.99 |
| GSMUA_Achr10P... | Banana | nucleus | 49.16 | 43.89 |
| GSMUA_Achr5P04270_001 | Banana | nucleus | 51.68 | 43.84 |
| GSMUA_Achr9P12860_001 | Banana | nucleus | 50.28 | 43.17 |
| Zm00001d051684_P007 | Maize | nucleus | 48.88 | 43.1 |
| Zm00001d045804_P003 | Maize | nucleus | 52.23 | 42.89 |
| Solyc12g006240.1.1 | Tomato | nucleus | 31.56 | 42.01 |
| TraesCS7B01G125500.1 | Wheat | cytosol, nucleus, plastid | 37.99 | 40.36 |
| Zm00001d017885_P001 | Maize | nucleus | 43.85 | 34.06 |
| CDY69474 | Canola | nucleus, plastid | 8.38 | 31.25 |
| CDY64255 | Canola | nucleus | 31.01 | 29.92 |
| CDY15696 | Canola | nucleus | 23.18 | 28.72 |
| CDY55657 | Canola | nucleus | 30.45 | 28.24 |
| CDY02749 | Canola | nucleus, plastid | 18.44 | 25.48 |
| CDY04213 | Canola | nucleus | 23.74 | 25.3 |
| CDY68819 | Canola | nucleus | 26.26 | 24.29 |
| CDY30385 | Canola | nucleus | 26.26 | 24.29 |
| CDY11755 | Canola | nucleus | 26.26 | 23.92 |
| CDY19821 | Canola | nucleus | 19.55 | 23.81 |
| CDX88145 | Canola | nucleus | 19.27 | 23.47 |
| CDY45597 | Canola | nucleus | 18.44 | 22.84 |
| CDY36171 | Canola | nucleus | 18.44 | 22.76 |
| CDY66639 | Canola | nucleus | 25.42 | 22.58 |
| CDX90119 | Canola | nucleus | 26.26 | 22.43 |
| CDX85529 | Canola | nucleus | 19.83 | 22.4 |
| CDX80141 | Canola | nucleus | 20.67 | 22.29 |
| CDY53026 | Canola | nucleus | 20.67 | 22.16 |
| CDX90969 | Canola | nucleus | 19.83 | 22.12 |
| CDY26470 | Canola | nucleus | 20.39 | 21.92 |
| CDX80476 | Canola | nucleus, plastid | 19.83 | 21.58 |
| CDX87105 | Canola | nucleus, plastid | 18.99 | 21.45 |
| CDX69493 | Canola | nucleus | 20.11 | 21.36 |
| CDY58843 | Canola | nucleus, plastid | 20.39 | 21.34 |
| CDY25892 | Canola | nucleus | 19.83 | 21.32 |
| CDY26469 | Canola | nucleus | 20.67 | 20.22 |
| CDX69494 | Canola | nucleus | 20.67 | 20.11 |
| CDY71884 | Canola | nucleus | 16.48 | 20.0 |
| CDY71818 | Canola | nucleus | 16.48 | 19.93 |
| CDY49730 | Canola | nucleus | 11.73 | 19.27 |
| CDX91989 | Canola | nucleus | 10.61 | 16.67 |
| CDY07393 | Canola | nucleus | 24.86 | 16.6 |
| CDX74261 | Canola | nucleus | 10.06 | 15.79 |
| CDY48428 | Canola | nucleus | 11.45 | 15.19 |
Protein Annotations
| MapMan:15.5.1.2 | GO:A0A078DG73 | InterPro:CCT_domain | EnsemblPlants:CDX86318 | ProteinID:CDX86318 | ProteinID:CDX86318.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0008270 | EnsemblPlantsGene:GSBRNA2T00144438001 | InterPro:IPR000315 | InterPro:IPR010402 | PFAM:PF00643 | PFAM:PF06203 |
| PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31717 | PANTHER:PTHR31717:SF39 | SMART:SM00336 | UniParc:UPI0004EEF6FE |
| InterPro:Znf_B-box | SEG:seg | : | : | : | : |
Description
BnaA06g30350D
Coordinates
chrLK031845:+:916046..918647
Molecular Weight (calculated)
39399.8 Da
IEP (calculated)
6.180
GRAVY (calculated)
-0.665
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MGYMCDFCGE QRSMVHCRSD AACLCLSCDR NVHSANALSK RHSRTLICER CNAQPASVRC TDERVSLCQN CDWLGHNGAT NSHHKKQTIN CYSGCPSSEE
101: LASIWSFCLE LDFSKGGQSA CEQGMGLMTI DEGTGEKKSG GHDVDVDQPG TSSAAQEKST LAKGPGVSED DFCGNLIMDE MDMAFEKYDE LFGTAYNSSK
201: DLFEHGGLES LFEKHEGLIQ GQQPAESNAA SGDSFMTCRT EPIICFSSQP AHSNISFSGA TGEGNNAGDF QDCGVSSMQQ VSKETPLWCP PTAQEISATT
301: RNNAVIRYKE KKKARKFDKR VRYVSRKERA DVRRRVKGRF VKSGEAYDYD PLSPTRSY
101: LASIWSFCLE LDFSKGGQSA CEQGMGLMTI DEGTGEKKSG GHDVDVDQPG TSSAAQEKST LAKGPGVSED DFCGNLIMDE MDMAFEKYDE LFGTAYNSSK
201: DLFEHGGLES LFEKHEGLIQ GQQPAESNAA SGDSFMTCRT EPIICFSSQP AHSNISFSGA TGEGNNAGDF QDCGVSSMQQ VSKETPLWCP PTAQEISATT
301: RNNAVIRYKE KKKARKFDKR VRYVSRKERA DVRRRVKGRF VKSGEAYDYD PLSPTRSY
001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLVCER CNAQPASVRC SDERVSLCQN CDWSGHDGKN STTTSHHKRQ TINCYSGCPS
101: SAELSSIWSF CMDLNISSAE ESACEQGMGL MTIDEDGTGE KSGVQKINVE QPETSSAAQG MDHSSVPENS SMAKELGVCE DDFNGNLISD EVDLALENYE
201: ELFGSAFNSS RYLFEHGGIG SLFEKDEAHE GSMQQPALSN NASADSFMTC RTEPIICYSS KPAHSNISFS GITGESNAGD FQDCGASSMK QLSREPQPWC
301: HPTAQDIIAS SHATTRNNAV MRYKEKKKAR KFDKRVRYVS RKERADVRRR VKGRFVKSGE AYDYDPMSPT RSY
101: SAELSSIWSF CMDLNISSAE ESACEQGMGL MTIDEDGTGE KSGVQKINVE QPETSSAAQG MDHSSVPENS SMAKELGVCE DDFNGNLISD EVDLALENYE
201: ELFGSAFNSS RYLFEHGGIG SLFEKDEAHE GSMQQPALSN NASADSFMTC RTEPIICYSS KPAHSNISFS GITGESNAGD FQDCGASSMK QLSREPQPWC
301: HPTAQDIIAS SHATTRNNAV MRYKEKKKAR KFDKRVRYVS RKERADVRRR VKGRFVKSGE AYDYDPMSPT RSY
Arabidopsis Description
COL10Zinc finger protein CONSTANS-LIKE 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUA9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.