Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008668.1-P | Field mustard | nucleus | 98.52 | 98.52 |
| CDY26470 | Canola | nucleus | 91.99 | 93.09 |
| CDY69474 | Canola | nucleus, plastid | 24.04 | 84.38 |
| CDX85529 | Canola | nucleus | 73.89 | 78.55 |
| CDX90969 | Canola | nucleus | 71.22 | 74.77 |
| AT5G15850.1 | Thale cress | nucleus | 73.29 | 69.58 |
| CDY71884 | Canola | nucleus | 51.93 | 59.32 |
| CDY71818 | Canola | nucleus | 51.34 | 58.45 |
| Solyc02g089500.2.1 | Tomato | nucleus | 21.66 | 51.41 |
| CDX91989 | Canola | nucleus | 34.12 | 50.44 |
| VIT_14s0083g00640.t01 | Wine grape | nucleus | 58.16 | 50.13 |
| CDX74261 | Canola | nucleus | 33.83 | 50.0 |
| KRH45169 | Soybean | nucleus | 49.85 | 48.28 |
| CDX69494 | Canola | nucleus | 52.52 | 48.1 |
| KRH18308 | Soybean | nucleus | 51.34 | 47.92 |
| KRG93763 | Soybean | nucleus | 51.63 | 47.54 |
| CDY26469 | Canola | nucleus | 51.63 | 47.54 |
| CDY45597 | Canola | nucleus | 40.36 | 47.06 |
| PGSC0003DMT400026065 | Potato | nucleus | 57.57 | 46.97 |
| CDY36171 | Canola | nucleus | 40.36 | 46.9 |
| KRH01455 | Soybean | nucleus | 48.37 | 46.31 |
| PGSC0003DMT400026068 | Potato | nucleus | 53.41 | 44.44 |
| CDY02749 | Canola | nucleus, plastid | 32.94 | 42.86 |
| CDY19821 | Canola | nucleus | 37.09 | 42.52 |
| CDX88145 | Canola | nucleus | 36.2 | 41.5 |
| CDX80476 | Canola | nucleus, plastid | 37.69 | 38.6 |
| CDX87105 | Canola | nucleus, plastid | 36.2 | 38.49 |
| CDY58843 | Canola | nucleus, plastid | 37.39 | 36.84 |
| CDY25892 | Canola | nucleus | 35.01 | 35.44 |
| CDY49730 | Canola | nucleus | 20.18 | 31.19 |
| CDY15696 | Canola | nucleus | 19.88 | 23.18 |
| CDY53026 | Canola | nucleus | 22.85 | 23.05 |
| CDX80141 | Canola | nucleus | 22.55 | 22.89 |
| CDY07979 | Canola | nucleus | 23.74 | 22.73 |
| CDY48743 | Canola | nucleus | 22.55 | 21.71 |
| CDY05691 | Canola | nucleus | 22.26 | 21.61 |
| CDY35952 | Canola | nucleus | 23.44 | 21.41 |
| CDY22125 | Canola | nucleus | 23.15 | 21.31 |
| CDY28029 | Canola | nucleus | 23.44 | 21.24 |
| CDX86318 | Canola | nucleus | 21.36 | 20.11 |
| CDX85321 | Canola | nucleus | 21.36 | 20.06 |
| CDX74034 | Canola | nucleus | 23.15 | 20.0 |
| HORVU0Hr1G022380.1 | Barley | cytosol | 16.02 | 19.01 |
| CDY66639 | Canola | nucleus | 21.96 | 18.36 |
| CDY68819 | Canola | nucleus | 21.07 | 18.35 |
| CDY30385 | Canola | nucleus | 21.07 | 18.35 |
| CDY64255 | Canola | nucleus | 20.18 | 18.33 |
| CDY55657 | Canola | nucleus | 20.77 | 18.13 |
| CDY11755 | Canola | nucleus | 20.47 | 17.56 |
| CDX90119 | Canola | nucleus | 21.07 | 16.95 |
| CDY04213 | Canola | nucleus | 16.02 | 16.07 |
| CDY48428 | Canola | nucleus | 9.5 | 11.85 |
| CDY07393 | Canola | nucleus | 17.21 | 10.82 |
Protein Annotations
| MapMan:15.5.1.2 | GO:A0A078C390 | InterPro:CCT_domain | EnsemblPlants:CDX69493 | ProteinID:CDX69493 | ProteinID:CDX69493.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0008270 | EnsemblPlantsGene:GSBRNA2T00135487001 | InterPro:IPR000315 | InterPro:IPR010402 | PFAM:PF00643 |
| PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF39 | SMART:SM00336 |
| UniParc:UPI0004EECCD1 | InterPro:Znf_B-box | SEG:seg | : | : | : |
Description
BnaA10g18420D
Coordinates
chrLK031790:+:485772..486849
Molecular Weight (calculated)
37940.4 Da
IEP (calculated)
7.009
GRAVY (calculated)
-0.645
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKQEGNWAQ TCDTCRSAAC TVYCRADSAY LCTSCDAQIH AANRLASRHE RVRVCQSCER APAAFFCKAD AASLCTACDS QIHSANPLAR RHQRVPILPI
101: SGSMVTNRSS ETTEAEDIVV VGQEEEDEAE AASWLLPTSV KNCGDNNNNN NNSQDNRFSV GEEYLDLVDY SKYQQDYNVP QRRSYVADGV VPLQVEVSKS
201: LSHMHHEQHN FQFGFTNVSS EASPIHMVSL VPESTLSETT VSHPRSPKAA MEELPEAPVQ MLSPMERKAR VMRYREKKKT RKFEKTIRYA SRKEYAEKRP
301: RIKGRFAKRN EVDAEEADKA FSSMVMFDTG YGIVPSF
101: SGSMVTNRSS ETTEAEDIVV VGQEEEDEAE AASWLLPTSV KNCGDNNNNN NNSQDNRFSV GEEYLDLVDY SKYQQDYNVP QRRSYVADGV VPLQVEVSKS
201: LSHMHHEQHN FQFGFTNVSS EASPIHMVSL VPESTLSETT VSHPRSPKAA MEELPEAPVQ MLSPMERKAR VMRYREKKKT RKFEKTIRYA SRKEYAEKRP
301: RIKGRFAKRN EVDAEEADKA FSSMVMFDTG YGIVPSF
001: MLKVESNWAQ ACDTCRSAAC TVYCRADSAY LCSSCDAQVH AANRLASRHE RVRVCQSCER APAAFFCKAD AASLCTTCDS EIHSANPLAR RHQRVPILPI
101: SEYSYSSTAT NHSCETTVTD PENRLVLGQE EEDEDEAEAA SWLLPNSGKN SGNNNGFSIG DEFLNLVDYS SSDKQFTDQS NQYQLDCNVP QRSYGEDGVV
201: PLQIEVSKGM YQEQQNFQLS INCGSWGALR SSNGSLSHMV NVSSMDLGVV PESTTSDATV SNPRSPKAVT DQPPYPPAQM LSPRDREARV LRYREKKKMR
301: KFEKTIRYAS RKAYAEKRPR IKGRFAKKKD VDEEANQAFS TMITFDTGYG IVPSF
101: SEYSYSSTAT NHSCETTVTD PENRLVLGQE EEDEDEAEAA SWLLPNSGKN SGNNNGFSIG DEFLNLVDYS SSDKQFTDQS NQYQLDCNVP QRSYGEDGVV
201: PLQIEVSKGM YQEQQNFQLS INCGSWGALR SSNGSLSHMV NVSSMDLGVV PESTTSDATV SNPRSPKAVT DQPPYPPAQM LSPRDREARV LRYREKKKMR
301: KFEKTIRYAS RKAYAEKRPR IKGRFAKKKD VDEEANQAFS TMITFDTGYG IVPSF
Arabidopsis Description
COL1Zinc finger protein CONSTANS-LIKE 1 [Source:UniProtKB/Swiss-Prot;Acc:O50055]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.