CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046925_P001	Maize	nucleus	91.49	94.51
OQU84486	Sorghum	nucleus	61.17	58.97
EES05406	Sorghum	nucleus	39.89	44.64
EES12446	Sorghum	nucleus	37.77	43.16
EES14798	Sorghum	nucleus	25.0	32.19
EER88227	Sorghum	nucleus	32.71	29.93
OQU85473	Sorghum	nucleus	27.13	27.87
KXG19836	Sorghum	nucleus	19.15	17.52
EES07342	Sorghum	nucleus	18.62	17.24
EES14176	Sorghum	nucleus	21.54	16.53
EER99873	Sorghum	nucleus	18.09	16.46
EER94860	Sorghum	nucleus	16.49	15.01

Protein Annotations

MapMan:35.1	EntrezGene:8058449	UniProt:C5Z775	InterPro:CCT_domain	ncoils:Coil	EnsemblPlants:EER90145
ProteinID:EER90145	ProteinID:EER90145.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150
GO:GO:0008270	GO:GO:0009416	GO:GO:0009628	GO:GO:0009791	GO:GO:0009908	GO:GO:0009909
InterPro:IPR000315	InterPro:IPR010402	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319
PANTHER:PTHR31319:SF3	SMART:SM00336	EnsemblPlantsGene:SORBI_3010G214000	unigene:Sbi.685	UniParc:UPI0001A89AF4	RefSeq:XP_002438778.1
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:55690072..55692293

Molecular Weight (calculated)

40035.7 Da

IEP (calculated)

6.420

GRAVY (calculated)

-0.312

Length

376 amino acids

Sequence
(BLAST)

001: MELHKYWGVG GRRCGSCEAA PAAVHCRTCV GGSSSFLCTT CDARPAHARL AHERVWVCEV CELAPAAVTC KADAAVLCAA CDADIHDANP LARRHARVPV
101: APIGSEAAAA AVEAMLFGTG DAAEADDQHN NAAAAAEQHQ HQHHAHHAHA LNLNVEAKDM KLDYLFSELD PYLSVEIPRF HHADSVVPNG AGAAGAVELD
201: FTCGIGVKHS SYSSYTATSL DLAHSGSSSE VGVVPEAFGG GGGGGGGSFE LDFTRPKPQA YMPYTATPQS HSVSSVDVEV VPERGDLPAV RPVPLMGESR
301: EARLMRYREK RKNRRFEKTI RYASRKAYAE TRPRIKGRFA KRADHDGDGD ADDAEAEAAV PSSYVLDFGY GVVPSF

Best Arabidopsis Sequence Match ( AT5G57660.1 )
(BLAST)

001: MGFGLESIKS ISGGWGAAAR SCDACKSVTA AVFCRVDSAF LCIACDTRIH SFTRHERVWV CEVCEQAPAA VTCKADAAAL CVSCDADIHS ANPLASRHER
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF

Arabidopsis Description

COL5Zinc finger protein CONSTANS-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHH8]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.