Factsheet for Os06t0275000-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

mitochondrion: 15069638

msms PMID: 15069638 doi

N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0771100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24790.1	Os02t0771100-01	AT2G32950.1	16339850

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88227	Sorghum	nucleus	72.66	69.83
Zm00001d045735_P002	Maize	extracellular, vacuole	70.89	65.42
TraesCS6D01G269500.1	Wheat	nucleus	60.76	65.04
TraesCS6B01G319500.1	Wheat	nucleus	60.51	64.59
TraesCS6A01G289400.1	Wheat	nucleus	60.0	64.23
Os06t0654900-01	Rice	nucleus	10.89	53.09
CDY02749	Canola	nucleus, plastid	28.35	43.24
CDY19821	Canola	nucleus	30.89	41.5
CDX88145	Canola	nucleus	30.63	41.16
Bra032061.1-P	Field mustard	nucleus	29.62	40.48
CDY45597	Canola	nucleus	29.62	40.48
CDY36171	Canola	nucleus	29.11	39.66
VIT_04s0008g07340.t01	Wine grape	nucleus, plastid	34.43	39.19
CDX87105	Canola	nucleus, plastid	31.14	38.8
AT2G24790.1	Thale cress	nucleus, plastid	28.61	38.44
Os04t0497700-01	Rice	nucleus	31.9	37.84
VIT_11s0052g01800.t01	Wine grape	nucleus, plastid	34.43	37.67
CDX80476	Canola	nucleus, plastid	31.14	37.39
Bra036528.1-P	Field mustard	nucleus	32.41	37.1
Bra009805.1-P	Field mustard	nucleus	32.66	36.75
Os02t0610500-01	Rice	nucleus	30.89	36.75
AT5G24930.1	Thale cress	nucleus	33.67	36.74
KRH18980	Soybean	nucleus	33.42	36.16
KRH02915	Soybean	nucleus	34.18	36.1
Bra020425.1-P	Field mustard	nucleus, plastid	31.14	35.96
CDY58843	Canola	nucleus, plastid	31.14	35.96
AT5G57660.1	Thale cress	nucleus, plastid	31.39	34.93
Bra002709.1-P	Field mustard	nucleus	18.99	34.4
CDY49730	Canola	nucleus	18.99	34.4
PGSC0003DMT400070680	Potato	nucleus	33.42	34.29
CDY25892	Canola	nucleus	28.86	34.23
Solyc07g006630.2.1	Tomato	nucleus	33.16	33.94
Os02t0178100-01	Rice	nucleus	27.09	32.33
Os09t0240200-01	Rice	nucleus	27.09	31.94
Os02t0724000-01	Rice	nucleus	21.77	21.13
Os08t0249000-01	Rice	nucleus	9.62	21.11
Os06t0298200-01	Rice	nucleus	20.76	20.1
Os07t0667300-01	Rice	nucleus	18.23	18.95
Os09t0509700-01	Rice	nucleus	18.99	17.4
Os03t0351100-01	Rice	nucleus	17.72	17.37
Os08t0536300-01	Rice	nucleus	20.51	16.6

Protein Annotations

MapMan:15.5.1.2	EntrezGene:4340746	EMBL:AB041838	ProteinID:AFK31567.1	ProteinID:BAB17627.1	ProteinID:BAB19341.1
ProteinID:BAC20631.1	ProteinID:BAF19292.1	ProteinID:BAF99113.1	ProteinID:BAS97223.1	InterPro:CCT_domain	ncoils:Coil
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009628	GO:GO:0009791	GO:GO:0009908	GO:GO:0009909	GO:GO:0009987
GO:GO:0030154	GO:GO:0045892	GO:GO:0046872	GO:GO:0048571	GO:GO:0048572	GO:GO:0048576
GO:GO:0048579	UniProt:I3RVE5	InterPro:IPR000315	InterPro:IPR010402	EnsemblPlantsGene:Os06g0275000	EnsemblPlants:Os06t0275000-01
PFAM:PF00643	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF38
UniProt:Q9FDX8	SMART:SM00336	UniParc:UPI00000A58E7	RefSeq:XP_015641799.1	InterPro:Znf_B-box	SEG:seg

Description

PHOTOSENSITIVITY 1Zinc finger protein, Heading date (Os06t0275000-01)

Coordinates

chr6:+:9336376..9338569

Molecular Weight (calculated)

43077.7 Da

IEP (calculated)

4.591

GRAVY (calculated)

-0.542

Length

395 amino acids

Sequence
(BLAST)

001: MNYNFGGNVF DQEVGVGGEG GGGGEGSGCP WARPCDGCRA APSVVYCRAD AAYLCASCDA RVHAANRVAS RHERVRVCEA CERAPAALAC RADAAALCVA
101: CDVQVHSANP LPAITIPATS VLAEAVVATA TVLGDKDEEV DSWLLLSKDS DNNNNNNNNN DNDNNDNNNS NSSNNGMYFG EVDEYFDLVG YNSYYDNRIE
201: NNQDRQYGMH EQQEQQQQQQ EMQKEFAEKE GSECVVPSQI TMLSEQQHSG YGVVGADQAA SMTAGVSAYT DSISNSISFS SMEAGIVPDS TVIDMPNSRI
301: LTPAGAINLF SGPSLQMSLH FSSMDREARV LRYREKKKAR KFEKTIRYET RKAYAEARPR IKGRFAKRSD VQIEVDQMFS TAALSDGSYG TVPWF

Best Arabidopsis Sequence Match ( AT3G02380.1 )
(BLAST)

001: MLKEESNESG TWARACDTCR SAACTVYCEA DSAYLCTTCD ARVHAANRVA SRHERVRVCQ SCESAPAAFL CKADAASLCT ACDAEIHSAN PLARRHQRVP
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF

Arabidopsis Description

COL2Zinc finger protein CONSTANS-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q96502]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.