Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G326100.1 | |
| TraesCS6B01G356400.1 | |
| TraesCS6D01G305800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G24790.1 | TraesCS6A01G326100.1 | AT2G32950.1 | 16339850 |
| AT2G24790.1 | TraesCS6B01G356400.1 | AT2G32950.1 | 16339850 |
| AT2G24790.1 | TraesCS6D01G305800.1 | AT2G32950.1 | 16339850 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G269500.1 | Wheat | nucleus | 97.03 | 97.29 |
| TraesCS6A01G289400.1 | Wheat | nucleus | 95.41 | 95.66 |
| Os06t0275000-01 | Rice | mitochondrion | 64.59 | 60.51 |
| TraesCS7B01G118300.1 | Wheat | nucleus | 58.65 | 56.66 |
| Zm00001d045735_P002 | Maize | extracellular, vacuole | 62.43 | 53.97 |
| OQU85473 | Sorghum | nucleus | 51.89 | 52.46 |
| CDY19821 | Canola | nucleus | 34.05 | 42.86 |
| CDY36171 | Canola | nucleus | 32.43 | 41.38 |
| CDY02749 | Canola | nucleus, plastid | 28.92 | 41.31 |
| Bra032061.1-P | Field mustard | nucleus | 31.89 | 40.83 |
| CDX88145 | Canola | nucleus | 32.43 | 40.82 |
| VIT_04s0008g07340.t01 | Wine grape | nucleus, plastid | 38.11 | 40.63 |
| CDY45597 | Canola | nucleus | 31.62 | 40.48 |
| CDX87105 | Canola | nucleus, plastid | 33.24 | 38.8 |
| AT2G24790.1 | Thale cress | nucleus, plastid | 30.81 | 38.78 |
| Bra036528.1-P | Field mustard | nucleus | 35.68 | 38.26 |
| VIT_11s0052g01800.t01 | Wine grape | nucleus, plastid | 37.3 | 38.23 |
| CDX80476 | Canola | nucleus, plastid | 33.78 | 37.99 |
| Bra009805.1-P | Field mustard | nucleus | 35.95 | 37.89 |
| KRH18980 | Soybean | nucleus | 37.3 | 37.81 |
| AT5G24930.1 | Thale cress | nucleus | 36.49 | 37.29 |
| TraesCS6B01G248400.1 | Wheat | nucleus | 32.16 | 37.07 |
| KRH02915 | Soybean | nucleus | 36.76 | 36.36 |
| TraesCS2B01G372000.1 | Wheat | nucleus | 30.54 | 35.42 |
| CDY58843 | Canola | nucleus, plastid | 32.7 | 35.38 |
| Bra020425.1-P | Field mustard | nucleus, plastid | 32.43 | 35.09 |
| CDY25892 | Canola | nucleus | 31.35 | 34.83 |
| AT5G57660.1 | Thale cress | nucleus, plastid | 33.24 | 34.65 |
| TraesCS7B01G032800.1 | Wheat | nucleus | 22.43 | 34.16 |
| Solyc07g006630.2.1 | Tomato | nucleus | 35.41 | 33.94 |
| PGSC0003DMT400070680 | Potato | nucleus | 35.14 | 33.77 |
| Bra002709.1-P | Field mustard | nucleus | 19.46 | 33.03 |
| CDY49730 | Canola | nucleus | 19.46 | 33.03 |
| TraesCS6B01G179000.2 | Wheat | mitochondrion | 32.16 | 31.73 |
| TraesCS5B01G163500.1 | Wheat | nucleus | 27.03 | 30.77 |
| TraesCS7B01G400600.1 | Wheat | nucleus | 30.27 | 30.11 |
| TraesCS6B01G315400.1 | Wheat | nucleus | 21.35 | 20.26 |
| TraesCS2B01G140300.1 | Wheat | nucleus | 17.57 | 16.8 |
| TraesCS7B01G125500.1 | Wheat | cytosol, nucleus, plastid | 14.59 | 16.02 |
| TraesCS4B01G155800.1 | Wheat | nucleus | 16.76 | 15.62 |
| TraesCS7B01G161500.1 | Wheat | nucleus | 20.54 | 15.57 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G319500.1 | EnsemblPlantsGene:TraesCS6B01G319500 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:CCT_domain | InterPro:IPR000315 | InterPro:IPR010402 |
| InterPro:Znf_B-box | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF38 | PFAM:PF00643 | PFAM:PF06203 | PFscan:PS50119 |
| PFscan:PS51017 | SEG:seg | SMART:SM00336 | TIGR:cd00021 | MapMan:15.5.1.2 | : |
Description
No Description!
Coordinates
chr6B:-:567397714..567399418
Molecular Weight (calculated)
41157.0 Da
IEP (calculated)
5.760
GRAVY (calculated)
-0.534
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MFMNCNFNSN LLEKEAGRTS FPWARPCDGC HAAPSAVYCC ADAAYLCASC DTQVHSANRV ASRHERVRVC ETCESAPAVL ACHADAAALC TACDAQVHSA
101: NPIAQRHQRV PVLPLPAVAL PAASGFVEAE ASVTAHGDKE EGEEVDSWLL RRNSDDNNCA NKIDRYFNLV GYNMYYDNIT CDPRPEEQYR MQEQQHVQNR
201: YIEKEGCECV VPPQVVMASE QQESDYGTIG AGQAASVTAM TSTYTASISN DISFSSMEVG IVPDNTRPDI SNSNILTSSE AMELSGHSLQ MPVHFNSMDR
301: EARVLRYKEK KQTRKFQKTI RYATRKAYAE ARPRIKGRFA KRSDIEHEED HMLSPPALQD TSSYNTAPWF
101: NPIAQRHQRV PVLPLPAVAL PAASGFVEAE ASVTAHGDKE EGEEVDSWLL RRNSDDNNCA NKIDRYFNLV GYNMYYDNIT CDPRPEEQYR MQEQQHVQNR
201: YIEKEGCECV VPPQVVMASE QQESDYGTIG AGQAASVTAM TSTYTASISN DISFSSMEVG IVPDNTRPDI SNSNILTSSE AMELSGHSLQ MPVHFNSMDR
301: EARVLRYKEK KQTRKFQKTI RYATRKAYAE ARPRIKGRFA KRSDIEHEED HMLSPPALQD TSSYNTAPWF
001: MLKEESNESG TWARACDTCR SAACTVYCEA DSAYLCTTCD ARVHAANRVA SRHERVRVCQ SCESAPAAFL CKADAASLCT ACDAEIHSAN PLARRHQRVP
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF
Arabidopsis Description
COL2Zinc finger protein CONSTANS-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q96502]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.