Factsheet for Bra001043.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74261	Canola	nucleus	98.68	98.68
Bra021464.1-P	Field mustard	nucleus	72.37	51.4
GSMUA_Achr4P18680_001	Banana	nucleus	18.42	47.73
Bra023541.1-P	Field mustard	nucleus	49.12	35.56
Bra002709.1-P	Field mustard	nucleus	32.46	33.95
Bra008668.1-P	Field mustard	nucleus	50.0	33.83
GSMUA_Achr3P28130_001	Banana	nucleus	41.23	33.57
Bra008669.1-P	Field mustard	nucleus	50.0	31.15
GSMUA_Achr9P22690_001	Banana	nucleus, plastid	37.28	29.21
Bra032061.1-P	Field mustard	nucleus	35.53	28.03
Bra009805.1-P	Field mustard	nucleus	40.35	26.21
Bra036528.1-P	Field mustard	nucleus	39.47	26.09
Bra020425.1-P	Field mustard	nucleus, plastid	34.21	22.81
Bra030070.1-P	Field mustard	nucleus	16.23	12.01
Bra004423.1-P	Field mustard	nucleus	17.54	11.98
Bra001264.1-P	Field mustard	nucleus	16.67	10.83
Bra040020.1-P	Field mustard	nucleus	17.11	10.66
Bra029666.1-P	Field mustard	nucleus	17.11	10.1
Bra010908.1-P	Field mustard	nucleus	18.42	10.05
Bra020709.1-P	Field mustard	nucleus	15.35	9.97
Bra037499.1-P	Field mustard	nucleus	14.91	9.86
Bra023858.1-P	Field mustard	nucleus	16.67	9.84
Bra041077.1-P	Field mustard	nucleus	17.54	9.8
HORVU0Hr1G022380.1	Barley	cytosol	6.14	4.93

Protein Annotations

EnsemblPlants:Bra001043.1	EnsemblPlants:Bra001043.1-P	EnsemblPlantsGene:Bra001043	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:CCT_domain	InterPro:IPR010402
PANTHER:PTHR31319	PANTHER:PTHR31319:SF39	PFAM:PF06203	PFscan:PS51017	SEG:seg	UniParc:UPI0002540869
UniProt:M4CA14	MapMan:35.1	:	:	:	:

Description

AT3G02380 (E=1e-075) COL2 | COL2 (constans-like 2); transcription factor/ zinc ion binding

Coordinates

chrA03:-:14509278..14510060

Molecular Weight (calculated)

26273.3 Da

IEP (calculated)

5.064

GRAVY (calculated)

-0.929

Length

228 amino acids

Sequence
(BLAST)

001: MLKEETNESG FVAGKEDDEA DREVASWLML NAEKDSDNHN NGFLFGVEYL DLVDYSSSVD NQFEDQYSHY QRSFGGEDGV VPLQVEEPKS YQKQSHHNYG
101: HYNYNGSLKD LNHTVSVSSM DITVVPESTE SDTTVQYYKE TIDQLFGPPT QMVQQLTPAD REARVQRYRE KKKRRKFEKT IRYASRKAYA EIRPRIKGRF
201: AKRTETEADA EQLFSTSLMA GYGIVPSF

Best Arabidopsis Sequence Match ( AT3G02380.1 )
(BLAST)

001: MLKEESNESG TWARACDTCR SAACTVYCEA DSAYLCTTCD ARVHAANRVA SRHERVRVCQ SCESAPAAFL CKADAASLCT ACDAEIHSAN PLARRHQRVP
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF

Arabidopsis Description

COL2Zinc finger protein CONSTANS-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q96502]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.