Factsheet for GSMUA_Achr1P13700_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P13690_001
GSMUA_Achr1P13700_001
GSMUA_Achr3P20130_001
GSMUA_Achr3P28130_001
GSMUA_Achr3P31750_001
GSMUA_Achr4P18680_001
GSMUA_Achr9P22690_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53090.1	GSMUA_Achr1P13690_001	AT1G53090.1	18812498
AT1G53090.1	GSMUA_Achr1P13700_001	AT1G53090.1	18812498
AT1G53090.1	GSMUA_Achr3P31750_001	AT1G53090.1	18812498
AT1G53090.1	GSMUA_Achr3P20130_001	AT2G32950.1	12887588
AT1G53090.1	GSMUA_AchrUn_...	AT2G32950.1	12887588
AT1G53090.1	GSMUA_Achr3P20130_001	AT2G32950.1	18812498
AT1G53090.1	GSMUA_AchrUn_...	AT2G32950.1	18812498
AT1G53090.1	GSMUA_Achr3P20130_001	AT2G32950.1	21798944
AT1G53090.1	GSMUA_AchrUn_...	AT2G32950.1	21798944
AT1G53090.1	GSMUA_Achr3P28130_001	AT5G15850.1	16854975
AT1G53090.1	GSMUA_Achr4P18680_001	AT5G15850.1	16854975
AT1G53090.1	GSMUA_Achr9P22690_001	AT5G15850.1	16854975
AT1G53090.1	GSMUA_Achr3P28130_001	AT5G15850.1	18812498
AT1G53090.1	GSMUA_Achr4P18680_001	AT5G15850.1	18812498
AT1G53090.1	GSMUA_Achr9P22690_001	AT5G15850.1	18812498

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P31750_001	Banana	nucleus	60.65	60.81
TraesCS3A01G284700.2	Wheat	cytosol	56.23	55.87
TraesCS3B01G318600.1	Wheat	cytosol	55.06	55.14
TraesCS3D01G284500.2	Wheat	cytosol	55.06	55.06
Zm00001d043592_P004	Maize	cytosol	55.32	53.86
HORVU3Hr1G068840.2	Barley	cytosol, mitochondrion	53.12	53.53
CDY50512	Canola	nucleus	50.78	52.98
Zm00001d011746_P002	Maize	nucleus	54.94	52.94
OQU87453	Sorghum	cytosol	52.6	52.73
Os01t0725800-01	Rice	nucleus	42.6	52.23
Bra038098.1-P	Field mustard	nucleus	21.95	52.0
CDX98548	Canola	nucleus, plastid	52.21	50.63
Bra027259.1-P	Field mustard	nucleus, plastid	52.21	50.63
Bra021100.1-P	Field mustard	nucleus	51.17	50.51
CDX97654	Canola	nucleus, plastid	52.08	50.44
CDY21834	Canola	nucleus, plastid	51.69	50.32
CDY20122	Canola	nucleus	51.43	50.25
AT1G53090.1	Thale cress	nucleus	51.82	50.25
Solyc07g063120.2.1	Tomato	cytosol	53.51	49.64
CDY25880	Canola	nucleus	29.61	49.46
VIT_12s0028g03570.t01	Wine grape	cytosol	56.88	49.05
VIT_19s0014g02660.t01	Wine grape	nucleus	57.92	48.9
KRH26155	Soybean	cytosol	49.87	48.73
Solyc12g013840.1.1	Tomato	nucleus	54.03	48.26
PGSC0003DMT400039600	Potato	cytosol	54.16	48.04
AT3G15354.3	Thale cress	nucleus	52.6	47.93
KRH55275	Soybean	cytosol	49.74	47.64
KRH27246	Soybean	plastid	55.32	46.97
KRH22086	Soybean	plastid	54.42	46.25
KRH55271	Soybean	cytosol	6.23	37.8
GSMUA_AchrUn_...	Banana	nucleus	26.36	31.77
GSMUA_Achr11P...	Banana	cytosol	32.99	30.83
GSMUA_Achr3P20130_001	Banana	nucleus	26.62	30.33
GSMUA_Achr1P28310_001	Banana	nucleus	35.84	27.06
GSMUA_Achr8P05740_001	Banana	nucleus	35.97	25.84
GSMUA_Achr1P13690_001	Banana	cytosol, mitochondrion, nucleus, plastid	2.21	22.08
GSMUA_Achr9P23670_001	Banana	cytosol	6.88	20.38
GSMUA_Achr4P11950_001	Banana	mitochondrion	6.49	16.78

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.16	MapMan:19.2.2.8.3.4.2	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr1G13700_001	EnsemblPlants:GSMUA_Achr1P13700_001	EnsemblPlants:GSMUA_Achr1T13700_001	InterPro:IPR000719
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:Kinase-like_dom_sf	UniProt:M0RZM8	PFAM:PF00400
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50011	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44218
PANTHER:PTHR44218:SF1	InterPro:Prot_kinase_dom	SMART:SM00220	SMART:SM00320	SUPFAM:SSF50978	SUPFAM:SSF56112
UniParc:UPI000295C974	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

Protein SPA1-RELATED 3 [Source:GMGC_GENE;Acc:GSMUA_Achr1G13700_001]

Coordinates

chr1:-:10446156..10449456

Molecular Weight (calculated)

85942.0 Da

IEP (calculated)

6.878

GRAVY (calculated)

-0.331

Length

770 amino acids

Sequence
(BLAST)

001: MDGSEEASGW AARSSASGAP GAAYPASSSS LGLVRHRRRT LVREEDEFEE EEEVEAAQEQ VSRILSSADK GGGGDADVSL REWLDRPGRA VDLLECLHIF
101: RQIAEAVGSA HGQGVVVANV RPSCFVMSPL NSVSFIESAS CSTSGSRNRS FYGPSSSTRL KDRREEDGAD EKKTFPLKRI LLMEWSWYTS PEEADGVGRG
201: TFAADVYRLG VLLFELFCTF DSLEEKLTTM ADLRHRVLPP QLLLKWPKEA SFCLWLLHPQ PDTRPKIRSV LRSEFLNRPT SKLEERVAAI KLTEEIEDEE
301: LLLEFLLHLK QRKQEVADRL RDSICFISAD VQEVQDQRSI LLQNSYPELD RGGRSATSTL DHPAPRSGTE LQIQVSIASK SSRLMKNFKK LEAAYFSTRR
401: RGSRSTRRPE SKQNEWINPF LEGLCKYLSF SRLKVKADLK QGDLLNSMNL VCSMDFDRDN EFFATAGVNK KIKVFECDMI LNEDRGIHYP VVEMSNRSKL
501: SCICWNGYIK SQIASSDFEG VVQVWDVTRS QSLAEMREHE KRVWSVDFSL ADPTRLASGG DDGTVKLWSI NKAILFLHLL YAGSVGTIRT KANVCSIQFQ
601: PESAHLLAVG SADHKVYCFD LRNLRMPCCT LAGHTKTVSD VKYLDSSHVV SASTDNSLKL WNLPASTSGV HEAPLQTFAG HTNNKNFVGL SVSDGYIATG
701: SETNEVCISC ASTSSILLID IIHMLVVGIF TPCPDGQYGL VRFRSYEGIH MGIQDGGRRV RSGQRWRLQG

Best Arabidopsis Sequence Match ( AT1G53090.2 )
(BLAST)

001: MKGSSESSSR GLNNTSGVSE FCTDGSKSLS HIDYVRSLLG SHKEANLGGL DDDSIVRALE CEDVSLRQWL DNPDRSVDAF ECFHVFRQIV EIVNAAHSQG
101: IVVHNVRPSC FVMSSFNNVS FIESASCSDS GSDEDATTKS REIGSSRQEE ILSERRSKQQ EEVKKQPFPM KQILAMEMSW YTSHEEDNGS LCNCASDIYR
201: LGVLLFELFC PVSSREEKSR TMSSLRHRVL PPQILLNWPK EASFCLWLLH PEPSCRPSMS ELLQSEFINE PRENLEEREA AMELRDRIEE QELLLEFLFL
301: IQQRKQEAAD KLQDTISLLS SDIDQVVKRQ LVLQQKGRDV RSFLASRKRI RQGAETTAAE EENDDNSIDE ESKLDDTLES TLLESSRLMR NLKKLESVYF
401: ATRYRQIKAA TAAEKPLARY YSALSCNGRS SEKSSMSQPS KDPINDSRQG GWIDPFLEGL CKYLSFSKLR VKADLKQGDL LNSSNLVCAI GFDRDGEFFA
501: TAGVNKKIKI FECESIIKDG RDIHYPVVEL ASRSKLSGIC WNSYIKSQVA SSNFEGVVQV WDVARNQLVT EMKEHEKRVW SIDYSSADPT LLASGSDDGS
601: VKLWSINQGV SIGTIKTKAN ICCVQFPSET GRSLAFGSAD HKVYYYDLRN PKLPLCTMIG HHKTVSYVRF VDSSTLVSSS TDNTLKLWDL SMSISGINET
701: PLHSFMGHTN VKNFVGLSVS DGYIATGSET NEVFVYHKAF PMPVLSYKFK TIDPVSELEV DDASQFISSV CWRGQSSTLV AANSTGNIKI LEMV

Arabidopsis Description

SPA4SPA4 [Source:UniProtKB/TrEMBL;Acc:A0A178WBA0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.