Factsheet for Bra038098.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005541.1-P
Bra008668.1-P
Bra023541.1-P
Bra038098.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53090.1	Bra038098.1-P	AT1G53090.1	18812498
AT1G53090.1	Bra005541.1-P	AT2G32950.1	12887588
AT1G53090.1	Bra005541.1-P	AT2G32950.1	18812498
AT1G53090.1	Bra005541.1-P	AT2G32950.1	21798944
AT1G53090.1	Bra008668.1-P	AT5G15850.1	16854975
AT1G53090.1	Bra023541.1-P	AT5G15850.1	16854975
AT1G53090.1	Bra008668.1-P	AT5G15850.1	18812498
AT1G53090.1	Bra023541.1-P	AT5G15850.1	18812498

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25880	Canola	nucleus	99.69	70.28
AT1G53090.1	Thale cress	nucleus	83.08	34.01
Bra021100.1-P	Field mustard	nucleus	69.85	29.1
Bra027259.1-P	Field mustard	nucleus, plastid	70.46	28.84
Os01t0725800-01	Rice	nucleus	53.23	27.55
Solyc07g063120.2.1	Tomato	cytosol	62.77	24.58
KRH26155	Soybean	cytosol	55.69	22.97
KRH27246	Soybean	plastid	64.0	22.93
OQU87453	Sorghum	cytosol	53.85	22.79
KRH22086	Soybean	plastid	63.08	22.63
VIT_19s0014g02660.t01	Wine grape	nucleus	63.38	22.59
KRH55275	Soybean	cytosol	55.69	22.51
HORVU3Hr1G068840.2	Barley	cytosol, mitochondrion	52.0	22.12
TraesCS3D01G284500.2	Wheat	cytosol	52.31	22.08
TraesCS3B01G318600.1	Wheat	cytosol	52.0	21.98
GSMUA_Achr1P13700_001	Banana	nucleus	52.0	21.95
TraesCS3A01G284700.2	Wheat	cytosol	52.31	21.94
Zm00001d043592_P004	Maize	cytosol	53.23	21.87
Solyc12g013840.1.1	Tomato	nucleus	57.85	21.81
Zm00001d011746_P002	Maize	nucleus	53.54	21.78
PGSC0003DMT400039600	Potato	cytosol	57.85	21.66
GSMUA_Achr3P31750_001	Banana	nucleus	50.77	21.48
Bra021818.1-P	Field mustard	cytosol	4.31	11.76
Bra000420.1-P	Field mustard	nucleus	32.92	11.23
Bra004545.1-P	Field mustard	nucleus	34.15	10.99
Bra035252.1-P	Field mustard	nucleus	31.08	10.31
Bra005541.1-P	Field mustard	nucleus	19.69	9.57
KRH55271	Soybean	cytosol	2.15	5.51
Bra029131.1-P	Field mustard	cytosol	5.23	4.94
GSMUA_Achr1P13690_001	Banana	cytosol, mitochondrion, nucleus, plastid	0.0	0.0
Bra026485.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.16	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra038098	EnsemblPlants:Bra038098.1	EnsemblPlants:Bra038098.1-P
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0009628	GO:GO:0009637	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
GO:GO:0042802	InterPro:IPR000719	InterPro:IPR015943	InterPro:Kinase-like_dom_sf	UniProt:M4FAI4	PFscan:PS50011
PANTHER:PTHR44218	PANTHER:PTHR44218:SF1	InterPro:Prot_kinase_dom	SUPFAM:SSF56112	UniParc:UPI00025477F6	InterPro:WD40/YVTN_repeat-like_dom_sf
SEG:seg	:	:	:	:	:

Description

AT1G53090 (E=6e-064) SPA4 | SPA4 (SPA1-RELATED 4); protein binding / signal transducer

Coordinates

chrA05:-:10558960..10560175

Molecular Weight (calculated)

37282.4 Da

IEP (calculated)

5.931

GRAVY (calculated)

-0.543

Length

325 amino acids

Sequence
(BLAST)

001: MKKSQDVGGS SKEEEFQPFP MKEILAMEMS WYTSPKEDTG CATTYASDVY RLGVLLFELF CPVSSREEKS RTMSSLRHRV LPPQILLNWS KEASFCLWLL
101: HPEPTYRPSM SELLKSEFIN EPRESLEERE VAIDLRERIE EQELLLEFLF LIQQRKQETA DKLRKRIRQG AEGVEAEENE DDTLNSTLLE NSRLMRNFKK
201: LESVYFATRY RQIKASASAS KDKPLARYYS ALSSDGKSSV SNLTQPDSRQ GGWIDPFLEG LCKYLTFSKL RVKADLKQGD LLNSANLVCA IGFDRDGELF
301: ATAGVNKKIK IFECKSIIND GRDIH

Best Arabidopsis Sequence Match ( AT1G53090.5 )
(BLAST)

001: MKGSSESSSR GLNNTSGVSE FCTDGSKSLS HIDYVRSLLG SHKEANLGGL DDDSIVRALE CEDVSLRQWL DNPDRSVDAF ECFHVFRQIV EIVNAAHSQG
101: IVVHNVRPSC FVMSSFNNVS FIESASCSDS GSDEDATTKS REIGSSRQEE ILSERRSKQQ EEVKKQPFPM KQILAMEMSW YTSHEEDNGS LCNCASDIYR
201: LGVLLFELFC PVSSREEKSR TMSSLRHRVL PPQILLNWPK EASFCLWLLH PEPSCRPSMS ELLQSEFINE PRENLEEREA AMELRDRIEE QELLLEFLFL
301: IQQRKQEAAD KLQDTISLLS SDIDQVVKRQ LVLQQKGRDV RSFLASRKRI RQGAETTAAE EENDDNSIDE ESKLDDTLES TLLESSRLMR NLKKLESVYF
401: ATRYRQIKAA TAAEKPLARY YSALSCNGRS SEKSSMSQPS KDPINDSRQG GWIDPFLEGL CKYLSFSKLR VKADLKQGDL LNSSNLVCAI GFDRDGEFFA
501: TAGVNKKIKI FECESIIKDG RDIHYPVVEL ASRSKLSGIC WNSYIKSQVA SSNFEGVVQV WDVARNQLVT EMKEHEKRVW SIDYSSADPT LLASGSDDGS
601: VKLWSINQAN FETKPKRG

Arabidopsis Description

SPA4SPA4 [Source:UniProtKB/TrEMBL;Acc:A0A178WBA0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.