Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G09750.1 | CDX69281 | AT4G36930.1 | 17855426 |
| AT5G09750.1 | CDX75629 | AT4G36930.1 | 17855426 |
| AT5G09750.1 | CDY22448 | AT4G36930.1 | 17855426 |
| AT5G09750.1 | CDY44048 | AT4G36930.1 | 17855426 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028620.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY64847 | Canola | nucleus | 99.07 | 98.6 |
| AT5G09750.1 | Thale cress | nucleus | 89.72 | 85.71 |
| CDY21597 | Canola | nucleus | 84.11 | 80.72 |
| GSMUA_Achr6P18580_001 | Banana | cytosol | 44.86 | 78.69 |
| GSMUA_Achr7P23410_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 43.93 | 55.95 |
| GSMUA_Achr5P01290_001 | Banana | nucleus | 49.53 | 53.54 |
| GSMUA_Achr11P... | Banana | nucleus | 42.99 | 48.17 |
| CDX91916 | Canola | cytosol | 36.45 | 43.82 |
| CDX74329 | Canola | cytosol | 36.45 | 42.86 |
| KRH43543 | Soybean | nucleus | 54.21 | 42.8 |
| KRH59559 | Soybean | nucleus | 52.8 | 42.48 |
| Zm00001d049721_P001 | Maize | nucleus | 52.34 | 39.02 |
| Os08t0108500-01 | Rice | nucleus | 55.61 | 38.89 |
| CDY18636 | Canola | nucleus | 35.98 | 37.56 |
| CDX81342 | Canola | cytoskeleton, cytosol, nucleus | 35.98 | 37.2 |
| CDY12799 | Canola | nucleus | 36.92 | 36.24 |
| TraesCS7A01G323000.1 | Wheat | nucleus | 52.8 | 36.1 |
| Zm00001d035027_P001 | Maize | nucleus | 55.61 | 35.52 |
| TraesCS7D01G319600.1 | Wheat | nucleus | 52.34 | 35.33 |
| CDY30593 | Canola | nucleus | 35.05 | 35.21 |
| TraesCS7B01G223900.1 | Wheat | nucleus | 52.8 | 35.2 |
| CDY01443 | Canola | nucleus | 35.98 | 35.16 |
| EES14382 | Sorghum | nucleus | 56.07 | 34.48 |
| CDY17765 | Canola | nucleus | 35.05 | 33.19 |
| CDX68583 | Canola | nucleus | 35.05 | 33.04 |
| CDY63952 | Canola | nucleus | 35.51 | 32.9 |
| CDY43559 | Canola | nucleus | 35.51 | 32.9 |
| HORVU7Hr1G077270.3 | Barley | cytosol | 51.4 | 32.45 |
| CDX83121 | Canola | nucleus | 34.58 | 32.17 |
| CDY55900 | Canola | nucleus, plastid | 22.9 | 27.68 |
| CDY66929 | Canola | nucleus, plastid | 22.9 | 27.68 |
| CDY15706 | Canola | nucleus | 20.56 | 20.75 |
| CDY03948 | Canola | cytosol | 13.55 | 20.0 |
| CDY51449 | Canola | nucleus | 30.84 | 19.88 |
| CDY62045 | Canola | nucleus | 30.84 | 19.7 |
| CDY32423 | Canola | nucleus | 30.37 | 19.7 |
| CDY48884 | Canola | nucleus | 29.91 | 19.1 |
| CDX90106 | Canola | nucleus | 18.22 | 18.31 |
| CDX84906 | Canola | nucleus | 19.16 | 16.8 |
| CDY27630 | Canola | nucleus | 18.22 | 16.12 |
| CDY11802 | Canola | nucleus | 16.82 | 15.65 |
| CDY11768 | Canola | nucleus | 18.69 | 15.62 |
| CDY61813 | Canola | nucleus | 20.09 | 14.1 |
| CDY55674 | Canola | nucleus | 18.69 | 13.79 |
| CDY58387 | Canola | nucleus | 19.63 | 13.68 |
| CDX68049 | Canola | nucleus | 18.22 | 13.45 |
| CDY11694 | Canola | nucleus | 18.22 | 13.45 |
| CDX96145 | Canola | nucleus | 18.22 | 13.45 |
| CDX75386 | Canola | nucleus | 21.03 | 12.97 |
| CDX69011 | Canola | nucleus | 21.03 | 12.97 |
| CDY28328 | Canola | nucleus | 21.5 | 12.92 |
| CDX72435 | Canola | nucleus | 21.03 | 12.86 |
| CDY49379 | Canola | nucleus | 21.03 | 12.86 |
| CDX81461 | Canola | nucleus | 20.09 | 12.43 |
| CDY37221 | Canola | nucleus | 20.09 | 12.43 |
| CDY48431 | Canola | nucleus | 15.89 | 10.59 |
| CDY03946 | Canola | nucleus | 4.21 | 3.27 |
Protein Annotations
| EnsemblPlants:CDX85799 | EnsemblPlantsGene:GSBRNA2T00143559001 | Gene3D:4.10.280.10 | GO:A0A078DBS8 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF125 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:CDX85799 | ProteinID:CDX85799.1 |
| SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000254354F | MapMan:15.5.32 | : |
Description
BnaA02g00140D
Coordinates
chrLK031842:+:1724111..1724755
Molecular Weight (calculated)
24215.5 Da
IEP (calculated)
6.235
GRAVY (calculated)
-0.804
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNNMNPSLF QNYTWNNIIN NKSDDHHHND PIGMAMDQHT HLHIFNPFTS SSSHSHFPPL SSSLATTTTL FSGDQEEDED EEEPVEELSA MKEMMYKIAA
101: MQPVDIDPAT VKKPKRRNVR ISDDPQSVAA RHRRERISER IRILQRLVPG GTKMDTASML DEAIRYVKFL KRQIRLLNNP PPPQDQASQA MKTSWISPPP
201: PSDFGSEGGG GELI
101: MQPVDIDPAT VKKPKRRNVR ISDDPQSVAA RHRRERISER IRILQRLVPG GTKMDTASML DEAIRYVKFL KRQIRLLNNP PPPQDQASQA MKTSWISPPP
201: PSDFGSEGGG GELI
001: MNNYNMNPSL FQNYTWNNII NSSNNNNKND DHHHQHNNDP IGMAMDQYTQ LHIFNPFSSS HFPPLSSSLT TTTLLSGDQE DDEDEEEPLE ELGAMKEMMY
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI
Arabidopsis Description
HEC3Transcription factor HEC3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.