Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036801.1-P | Field mustard | nucleus | 98.27 | 98.27 |
| CDY63952 | Canola | nucleus | 98.27 | 98.27 |
| CDY18636 | Canola | nucleus | 78.36 | 88.29 |
| CDX81342 | Canola | cytoskeleton, cytosol, nucleus | 77.49 | 86.47 |
| CDY01443 | Canola | nucleus | 81.82 | 86.3 |
| CDY12799 | Canola | nucleus | 80.95 | 85.78 |
| AT5G67060.1 | Thale cress | nucleus | 88.74 | 85.06 |
| CDX68583 | Canola | nucleus | 71.0 | 72.25 |
| Solyc12g088790.1.1 | Tomato | nucleus | 37.23 | 71.07 |
| CDX83121 | Canola | nucleus | 70.56 | 70.87 |
| CDY17765 | Canola | nucleus | 67.53 | 69.03 |
| CDY30593 | Canola | nucleus | 62.77 | 68.08 |
| PGSC0003DMT400048857 | Potato | nucleus | 35.06 | 54.73 |
| KRH28464 | Soybean | nucleus | 50.65 | 48.35 |
| PGSC0003DMT400010344 | Potato | nucleus | 46.32 | 47.77 |
| KRH77007 | Soybean | nucleus | 51.08 | 47.01 |
| HORVU7Hr1G054880.1 | Barley | nucleus | 43.29 | 45.05 |
| TraesCS7D01G263400.1 | Wheat | nucleus | 42.86 | 45.0 |
| TraesCS7A01G262600.1 | Wheat | nucleus | 42.86 | 45.0 |
| TraesCS7B01G160500.1 | Wheat | nucleus | 42.42 | 44.34 |
| KRH57944 | Soybean | nucleus | 47.62 | 43.31 |
| KRH04603 | Soybean | nucleus | 50.65 | 41.49 |
| Os09t0455300-01 | Rice | nucleus | 41.99 | 41.1 |
| TraesCS5A01G237500.1 | Wheat | nucleus | 40.69 | 40.0 |
| TraesCS5D01G244000.1 | Wheat | nucleus | 40.69 | 40.0 |
| HORVU5Hr1G068110.1 | Barley | nucleus | 41.13 | 39.92 |
| TraesCS5B01G235200.1 | Wheat | nucleus | 40.26 | 39.57 |
| TraesCS6A01G142000.1 | Wheat | nucleus | 40.26 | 39.57 |
| Zm00001d050016_P001 | Maize | nucleus | 41.13 | 39.42 |
| Zm00001d020705_P001 | Maize | nucleus | 40.69 | 38.84 |
| CDX91916 | Canola | cytosol | 29.0 | 37.64 |
| GSMUA_Achr9P15380_001 | Banana | nucleus | 39.83 | 37.55 |
| EES15124 | Sorghum | nucleus | 43.72 | 37.55 |
| Zm00001d031781_P001 | Maize | nucleus | 40.26 | 37.05 |
| CDX74329 | Canola | cytosol | 28.57 | 36.26 |
| EER96848 | Sorghum | nucleus | 40.69 | 36.02 |
| Zm00001d005841_P001 | Maize | nucleus | 37.66 | 35.95 |
| CDX85799 | Canola | nucleus | 32.9 | 35.51 |
| CDY64847 | Canola | nucleus | 32.9 | 35.35 |
| CDY21597 | Canola | nucleus | 32.47 | 33.63 |
| CDY55900 | Canola | nucleus, plastid | 19.91 | 25.99 |
| CDY66929 | Canola | nucleus, plastid | 19.91 | 25.99 |
| CDY51449 | Canola | nucleus | 30.3 | 21.08 |
| CDY32423 | Canola | nucleus | 29.44 | 20.61 |
| CDY62045 | Canola | nucleus | 29.87 | 20.6 |
| CDY48884 | Canola | nucleus | 28.57 | 19.7 |
| CDY15706 | Canola | nucleus | 17.32 | 18.87 |
| CDX90106 | Canola | nucleus | 17.32 | 18.78 |
| CDY03948 | Canola | cytosol | 11.26 | 17.93 |
| CDY27630 | Canola | nucleus | 18.61 | 17.77 |
| CDX84906 | Canola | nucleus | 18.61 | 17.62 |
| CDY11768 | Canola | nucleus | 18.18 | 16.41 |
| CDY11802 | Canola | nucleus | 16.02 | 16.09 |
| CDY55674 | Canola | nucleus | 19.05 | 15.17 |
| CDX68049 | Canola | nucleus | 18.61 | 14.83 |
| CDY11694 | Canola | nucleus | 18.61 | 14.83 |
| CDX96145 | Canola | nucleus | 18.61 | 14.83 |
| CDY61813 | Canola | nucleus | 19.05 | 14.43 |
| CDY58387 | Canola | nucleus | 19.05 | 14.33 |
| CDY28328 | Canola | nucleus | 21.64 | 14.04 |
| CDX72435 | Canola | nucleus | 19.91 | 13.14 |
| CDY49379 | Canola | nucleus | 19.91 | 13.14 |
| CDX75386 | Canola | nucleus | 19.48 | 12.97 |
| CDX69011 | Canola | nucleus | 19.48 | 12.97 |
| CDX81461 | Canola | nucleus | 17.75 | 11.85 |
| CDY37221 | Canola | nucleus | 17.75 | 11.85 |
| CDY48431 | Canola | nucleus | 16.45 | 11.84 |
| CDY03946 | Canola | nucleus | 6.06 | 5.09 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078I1T5 | UniProt:A0A078I1T5 | EnsemblPlants:CDY43559 | ProteinID:CDY43559 |
| ProteinID:CDY43559.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00076855001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF74 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE19A1 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC02g16560DBnaC02g16560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1T5]
Coordinates
chrLK032561:+:66150..66845
Molecular Weight (calculated)
25328.5 Da
IEP (calculated)
10.077
GRAVY (calculated)
-0.487
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSDLMNMMQ QMEKLPEFCN TNPSFIDHNN NNNTYPFLFN SNHNHPDSMT YEPGFRYGSG LLTNPSSLSP NTAYSSVLHD KRNNSANMAA MREMIFRIAV
101: MQPIHIDPEA VKPPKRRNVR ISKDPQSVAA RHRRERISER IRILQRLVPG GTKMDTASML DEAIHYVKFL KKQVQSLEEQ AVVNSGGGGR VLVGGGGVTG
201: AVSGGGGGGV VMKGCGTMGS HQMVGNAQIL R
101: MQPIHIDPEA VKPPKRRNVR ISKDPQSVAA RHRRERISER IRILQRLVPG GTKMDTASML DEAIHYVKFL KKQVQSLEEQ AVVNSGGGGR VLVGGGGVTG
201: AVSGGGGGGV VMKGCGTMGS HQMVGNAQIL R
001: MDSDIMNMMM HQMEKLPEFC NPNSSFFSPD HNNTYPFLFN STHYQSDHSM TNEPGFRYGS GLLTNPSSIS PNTAYSSVFL DKRNNSNNNN NGTNMAAMRE
101: MIFRIAVMQP IHIDPEAVKP PKRRNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQAVV TGGGGGGGGR
201: VLIGGGGMTA ASGGGGGGGV VMKGCGTVGT HQMVGNAQIL R
101: MIFRIAVMQP IHIDPEAVKP PKRRNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQAVV TGGGGGGGGR
201: VLIGGGGMTA ASGGGGGGGV VMKGCGTVGT HQMVGNAQIL R
Arabidopsis Description
HEC1HEC1 [Source:UniProtKB/TrEMBL;Acc:A0A178UR10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.