Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d020705_P001 | Maize | nucleus | 70.66 | 70.66 |
| TraesCS5A01G237500.1 | Wheat | nucleus | 59.5 | 61.28 |
| TraesCS5D01G244000.1 | Wheat | nucleus | 59.09 | 60.85 |
| HORVU5Hr1G068110.1 | Barley | nucleus | 58.68 | 59.66 |
| TraesCS5B01G235200.1 | Wheat | nucleus | 57.02 | 58.72 |
| TraesCS6A01G142000.1 | Wheat | nucleus | 56.61 | 58.3 |
| Solyc12g088790.1.1 | Tomato | nucleus | 28.93 | 57.85 |
| PGSC0003DMT400048857 | Potato | nucleus | 30.58 | 50.0 |
| Zm00001d050016_P001 | Maize | nucleus | 48.35 | 48.55 |
| Zm00001d031781_P001 | Maize | nucleus | 47.93 | 46.22 |
| GSMUA_Achr9P15380_001 | Banana | nucleus | 44.63 | 44.08 |
| Bra037128.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 35.95 | 42.44 |
| CDY18636 | Canola | nucleus | 35.54 | 41.95 |
| CDX81342 | Canola | cytoskeleton, cytosol, nucleus | 35.54 | 41.55 |
| Bra036071.1-P | Field mustard | nucleus | 34.71 | 39.44 |
| CDY30593 | Canola | nucleus | 34.3 | 38.97 |
| Bra012128.1-P | Field mustard | nucleus | 35.12 | 38.81 |
| CDY12799 | Canola | nucleus | 34.71 | 38.53 |
| CDY01443 | Canola | nucleus | 34.71 | 38.36 |
| CDX68583 | Canola | nucleus | 35.54 | 37.89 |
| CDY63952 | Canola | nucleus | 35.95 | 37.66 |
| Bra036801.1-P | Field mustard | nucleus | 35.95 | 37.66 |
| CDY43559 | Canola | nucleus | 35.95 | 37.66 |
| AT3G50330.1 | Thale cress | nucleus | 35.54 | 37.23 |
| CDY17765 | Canola | nucleus | 34.71 | 37.17 |
| CDX83121 | Canola | nucleus | 35.12 | 36.96 |
| Bra030002.1-P | Field mustard | nucleus | 35.12 | 36.96 |
| PGSC0003DMT400010344 | Potato | nucleus | 33.88 | 36.61 |
| AT5G67060.1 | Thale cress | nucleus | 35.95 | 36.1 |
| KRH28464 | Soybean | nucleus | 34.3 | 34.3 |
| KRH77007 | Soybean | nucleus | 34.71 | 33.47 |
| KRH57944 | Soybean | nucleus | 31.82 | 30.32 |
| KRH04603 | Soybean | nucleus | 33.47 | 28.72 |
| Zm00001d049721_P001 | Maize | nucleus | 30.17 | 25.44 |
| Zm00001d035027_P001 | Maize | nucleus | 30.99 | 22.39 |
| Zm00001d042989_P001 | Maize | nucleus, plastid | 19.42 | 22.27 |
| Zm00001d042988_P001 | Maize | nucleus, plastid | 19.42 | 22.27 |
| Zm00001d038863_P001 | Maize | nucleus | 28.93 | 17.68 |
| Zm00001d043699_P001 | Maize | nucleus | 30.58 | 17.54 |
| Zm00001d048786_P001 | Maize | nucleus, plastid | 16.12 | 16.74 |
| Zm00001d011187_P001 | Maize | nucleus | 28.51 | 16.05 |
| Zm00001d017804_P001 | Maize | nucleus | 19.01 | 15.59 |
| Zm00001d044242_P001 | Maize | nucleus | 28.93 | 14.55 |
| Zm00001d041351_P001 | Maize | nucleus | 17.77 | 14.14 |
| Zm00001d021988_P001 | Maize | nucleus | 16.53 | 13.56 |
| Zm00001d006733_P001 | Maize | nucleus | 15.7 | 13.29 |
| Zm00001d008444_P001 | Maize | nucleus | 17.36 | 12.92 |
| Zm00001d028085_P001 | Maize | nucleus | 13.22 | 10.81 |
| Zm00001d048141_P001 | Maize | cytosol | 11.98 | 9.18 |
Protein Annotations
| EntrezGene:100217048 | MapMan:15.5.32 | Gene3D:4.10.280.10 | UniProt:B4FL37 | EMBL:BT037825 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | EMBL:KJ726887 | ProteinID:ONM22237.1 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF303 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00017B6A72 | EnsemblPlantsGene:Zm00001d005841 | EnsemblPlants:Zm00001d005841_P001 |
| EnsemblPlants:Zm00001d005841_T001 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
bHLH-transcription factor 20Transcription factor HEC2
Coordinates
chr2:-:190556326..190557054
Molecular Weight (calculated)
26396.4 Da
IEP (calculated)
9.658
GRAVY (calculated)
-0.497
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFDLLNYYS PEEAQLELMN TMLQLEQLTA LDGHRQSAMA PASPPISPMQ THHAGPHSFS PLPHTSTTTT TTATATGYPK KQHAPPRAVY GAATSSGLEH
101: HHLQLQDGGA LQAGPSSAAA ASADAMREAI FRIAALQPVE DQTTTGPEPE AAVRRAPKRR NVRVSKDPQS VAARLRRERI SERIRALQRL VPGGTKMDTA
201: SMLDEAIQYV KFLKSQLQSL QRAAASRHAP WQYALLPHAD ML
101: HHLQLQDGGA LQAGPSSAAA ASADAMREAI FRIAALQPVE DQTTTGPEPE AAVRRAPKRR NVRVSKDPQS VAARLRRERI SERIRALQRL VPGGTKMDTA
201: SMLDEAIQYV KFLKSQLQSL QRAAASRHAP WQYALLPHAD ML
001: MDSDIMNMMM HQMEKLPEFC NPNSSFFSPD HNNTYPFLFN STHYQSDHSM TNEPGFRYGS GLLTNPSSIS PNTAYSSVFL DKRNNSNNNN NGTNMAAMRE
101: MIFRIAVMQP IHIDPEAVKP PKRRNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQAVV TGGGGGGGGR
201: VLIGGGGMTA ASGGGGGGGV VMKGCGTVGT HQMVGNAQIL R
101: MIFRIAVMQP IHIDPEAVKP PKRRNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQAVV TGGGGGGGGR
201: VLIGGGGMTA ASGGGGGGGV VMKGCGTVGT HQMVGNAQIL R
Arabidopsis Description
HEC1HEC1 [Source:UniProtKB/TrEMBL;Acc:A0A178UR10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.