Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d042989_P001 | Maize | nucleus, plastid | 100.0 | 100.0 |
| OQU87789 | Sorghum | cytosol | 59.24 | 87.41 |
| Os01t0831000-01 | Rice | nucleus | 64.93 | 63.72 |
| TraesCS3A01G350600.1 | Wheat | nucleus | 58.77 | 58.49 |
| TraesCS3D01G344600.1 | Wheat | nucleus | 58.29 | 57.75 |
| HORVU3Hr1G087710.1 | Barley | nucleus | 57.35 | 57.62 |
| TraesCS3B01G383000.1 | Wheat | nucleus | 57.35 | 57.08 |
| Solyc09g005070.1.1 | Tomato | nucleus | 28.44 | 40.54 |
| VIT_08s0058g00110.t01 | Wine grape | plastid | 30.81 | 40.37 |
| KRH00301 | Soybean | nucleus, plastid | 33.18 | 39.77 |
| KRH49427 | Soybean | nucleus, plastid | 31.75 | 38.07 |
| KRH75991 | Soybean | nucleus, plastid | 30.33 | 35.96 |
| KRH65648 | Soybean | nucleus, plastid | 30.33 | 35.16 |
| GSMUA_Achr4P18820_001 | Banana | nucleus | 34.12 | 35.12 |
| AT5G01305.1 | Thale cress | nucleus, plastid | 26.54 | 32.75 |
| Bra028895.1-P | Field mustard | nucleus, plastid | 26.07 | 31.07 |
| CDY66929 | Canola | nucleus, plastid | 26.07 | 31.07 |
| CDY55900 | Canola | nucleus, plastid | 26.07 | 31.07 |
| Zm00001d031781_P001 | Maize | nucleus | 26.54 | 22.31 |
| Zm00001d050016_P001 | Maize | nucleus | 24.64 | 21.58 |
| Zm00001d020705_P001 | Maize | nucleus | 24.17 | 21.07 |
| Zm00001d005841_P001 | Maize | nucleus | 22.27 | 19.42 |
| Zm00001d049721_P001 | Maize | nucleus | 24.17 | 17.77 |
| Zm00001d035027_P001 | Maize | nucleus | 24.17 | 15.22 |
| Zm00001d048786_P001 | Maize | nucleus, plastid | 15.17 | 13.73 |
| Zm00001d017804_P001 | Maize | nucleus | 18.01 | 12.88 |
| Zm00001d006733_P001 | Maize | nucleus | 17.06 | 12.59 |
| Zm00001d021988_P001 | Maize | nucleus | 17.06 | 12.2 |
| Zm00001d041351_P001 | Maize | nucleus | 15.64 | 10.86 |
| Zm00001d038863_P001 | Maize | nucleus | 19.91 | 10.61 |
| Zm00001d011187_P001 | Maize | nucleus | 21.33 | 10.47 |
| Zm00001d008444_P001 | Maize | nucleus | 16.11 | 10.46 |
| Zm00001d043699_P001 | Maize | nucleus | 20.85 | 10.43 |
| Zm00001d044242_P001 | Maize | nucleus | 21.33 | 9.36 |
| Zm00001d028085_P001 | Maize | nucleus | 12.32 | 8.78 |
| Zm00001d048141_P001 | Maize | cytosol | 12.8 | 8.54 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | UniProt:A0A1D6N7X0 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | ProteinID:ONM36682.1 | ProteinID:ONM36683.1 |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF167 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI000842CA2B | EnsemblPlantsGene:Zm00001d042988 | EnsemblPlants:Zm00001d042988_P001 | EnsemblPlants:Zm00001d042988_T001 | InterPro:bHLH_dom | SEG:seg |
Description
Transcription factor bHLH83
Coordinates
chr3:+:185995285..185995920
Molecular Weight (calculated)
22746.9 Da
IEP (calculated)
6.163
GRAVY (calculated)
-0.330
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MYDPRGFPII HPQPYLQHPV AGALGDSRVR GGGSGARRRP GAKLSTDPQS VAARERRHRI SDRFRVLRSL VPGGSKMDTV SMLEQAIHYV KFLKTQISLH
101: QAALMQHEEG CHAELAAYSA VAVVGDNEVT LASHGRTGAC DEMMQLQVAA EEALSYGVDA HQPYGLDPRQ LSGGHELPPL PASCIFLEEP ADACYSVCDL
201: DDGDTGLPGS Y
101: QAALMQHEEG CHAELAAYSA VAVVGDNEVT LASHGRTGAC DEMMQLQVAA EEALSYGVDA HQPYGLDPRQ LSGGHELPPL PASCIFLEEP ADACYSVCDL
201: DDGDTGLPGS Y
001: MDDFNLRSEN PNSSSTTSSS SSSFHRHKSE TGNTKRSRST STLSTDPQSV AARDRRHRIS DRFKILQSMV PGGAKMDTVS MLDEAISYVK FLKAQIWYHQ
101: NMLLFINDHE TTSSCTYSPG AGEFGPKLFG YDDDYAPIMD TYSQGVPLTV ADSKYTPWFG SVDDEQERDS S
101: NMLLFINDHE TTSSCTYSPG AGEFGPKLFG YDDDYAPIMD TYSQGVPLTV ADSKYTPWFG SVDDEQERDS S
Arabidopsis Description
Transcription factor bHLH140-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BD33]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.