CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042989_P001	Maize	nucleus, plastid	87.41	59.24
Zm00001d042988_P001	Maize	nucleus, plastid	87.41	59.24
Os01t0831000-01	Rice	nucleus	55.94	37.21
TraesCS3A01G350600.1	Wheat	nucleus	50.35	33.96
TraesCS3D01G344600.1	Wheat	nucleus	49.65	33.33
HORVU3Hr1G087710.1	Barley	nucleus	48.95	33.33
TraesCS3B01G383000.1	Wheat	nucleus	48.25	32.55
KRH00301	Soybean	nucleus, plastid	24.48	19.89
KRH49427	Soybean	nucleus, plastid	23.08	18.75
VIT_08s0058g00110.t01	Wine grape	plastid	20.98	18.63
Solyc09g005070.1.1	Tomato	nucleus	18.88	18.24
GSMUA_Achr4P18820_001	Banana	nucleus	24.48	17.07
KRH65648	Soybean	nucleus, plastid	20.28	15.93
AT5G01305.1	Thale cress	nucleus, plastid	18.88	15.79
KRH75991	Soybean	nucleus, plastid	19.58	15.73
Bra028895.1-P	Field mustard	nucleus, plastid	17.48	14.12
CDY55900	Canola	nucleus, plastid	17.48	14.12
CDY66929	Canola	nucleus, plastid	17.48	14.12
EES15124	Sorghum	nucleus	15.38	8.18
EER96848	Sorghum	nucleus	14.69	8.05
OQU83893	Sorghum	nucleus	11.19	6.61
EER93400	Sorghum	nucleus	12.59	6.16
EES14382	Sorghum	nucleus	14.69	6.03
EES00435	Sorghum	nucleus	11.89	5.86
EER99632	Sorghum	nucleus	10.49	5.32
EES07381	Sorghum	nucleus	11.19	5.23
EES17296	Sorghum	nucleus	11.19	5.06
EER91225	Sorghum	nucleus	10.49	5.0
KXG39918	Sorghum	nucleus	11.19	4.97
KXG33221	Sorghum	nucleus	13.29	4.55
EES18589	Sorghum	nucleus	11.89	4.24
OQU87026	Sorghum	nucleus	13.29	4.12

Protein Annotations

EnsemblPlants:OQU87789	EnsemblPlantsGene:SORBI_3003G344501	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009987
GO:GO:0045893	GO:GO:0046983	GO:GO:2000032	PANTHER:PTHR12565	PANTHER:PTHR12565:SF167	ProteinID:OQU87789
ProteinID:OQU87789.1	SEG:seg	UniParc:UPI0009DC8407	UniProt:A0A1W0W091	MapMan:15.5.32	:

Description

hypothetical protein

Coordinates

chr3:-:66583460..66584226

Molecular Weight (calculated)

15049.6 Da

IEP (calculated)

4.156

GRAVY (calculated)

-0.022

Length

143 amino acids

Sequence
(BLAST)

001: MDTVSMLEQA IHYVKFLKAQ ISLHQAALMQ HEEGCHAELA AAYSAAAAAV AGDDEVTLAS HGRTGACDEV MQLQLQVPGE EALSYGVVAA HQPYGLDPRH
101: QLSGGHELPP LPASCIFVEE PADACYSVCD LDDGETGLPA GSY

Best Arabidopsis Sequence Match ( AT5G01305.1 )
(BLAST)

001: MDDFNLRSEN PNSSSTTSSS SSSFHRHKSE TGNTKRSRST STLSTDPQSV AARDRRHRIS DRFKILQSMV PGGAKMDTVS MLDEAISYVK FLKAQIWYHQ
101: NMLLFINDHE TTSSCTYSPG AGEFGPKLFG YDDDYAPIMD TYSQGVPLTV ADSKYTPWFG SVDDEQERDS S

Arabidopsis Description

Transcription factor bHLH140-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BD33]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.