CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94470

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G66470.1	EER94470	AT5G47100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P01250_001	Banana	cytosol, nucleus, plastid	25.86	61.98
Zm00001d008444_P001	Maize	nucleus	69.31	61.85
Os01t0111500-01	Rice	nucleus	56.9	55.93
TraesCS3A01G006300.1	Wheat	cytosol, nucleus, plastid	52.07	55.11
TraesCS3D01G004300.1	Wheat	cytosol, nucleus, plastid	51.72	54.55
TraesCS3B01G010400.1	Wheat	nucleus	51.38	54.38
TraesCS3B01G007700.1	Wheat	nucleus	51.03	54.01
EES07381	Sorghum	nucleus	42.07	39.87
GSMUA_Achr10P...	Banana	nucleus	37.93	36.91
GSMUA_Achr2P22860_001	Banana	nucleus	38.97	35.09
CDY55674	Canola	nucleus	33.79	33.79
CDY11694	Canola	nucleus	33.45	33.45
CDX68049	Canola	nucleus	33.45	33.45
CDX96145	Canola	nucleus	33.45	33.45
KRH15121	Soybean	nucleus	33.1	32.76
AT1G66470.1	Thale cress	nucleus	33.45	32.55
KRH73015	Soybean	nucleus	33.1	32.54
GSMUA_Achr6P09370_001	Banana	nucleus	37.93	32.45
AT5G37800.1	Thale cress	nucleus	33.79	31.92
CDY61813	Canola	nucleus	33.1	31.48
Bra019708.1-P	Field mustard	nucleus	33.1	31.27
Solyc02g091440.1.1	Tomato	nucleus	34.14	31.23
VIT_14s0006g01470.t01	Wine grape	nucleus	37.24	31.12
CDY58387	Canola	nucleus	32.76	30.94
PGSC0003DMT400078776	Potato	nucleus	33.79	30.91
KRG97923	Soybean	nucleus	33.45	28.61
Bra004169.1-P	Field mustard	nucleus	26.21	28.36
KRH30960	Soybean	nucleus	33.1	28.32
EER99632	Sorghum	nucleus	21.03	21.63
OQU83893	Sorghum	nucleus	17.93	21.49
EER93400	Sorghum	nucleus	21.03	20.89
EER91225	Sorghum	nucleus	20.34	19.67
EES17296	Sorghum	nucleus	20.34	18.67
KXG39918	Sorghum	nucleus	20.69	18.63
EER96848	Sorghum	nucleus	14.83	16.48
EES15124	Sorghum	nucleus	14.14	15.24
OQU87789	Sorghum	cytosol	5.86	11.89
EES14382	Sorghum	nucleus	13.79	11.49
EES18589	Sorghum	nucleus	15.17	10.97
KXG33221	Sorghum	nucleus	14.83	10.29
OQU87026	Sorghum	nucleus	12.76	8.03

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:8079074	UniProt:C5XEV7	EnsemblPlants:EES00435	ProteinID:EES00435
ProteinID:EES00435.1	GO:GO:0001046	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF64	SMART:SM00353	EnsemblPlantsGene:SORBI_3003G099000
SUPFAM:SSF47459	UniParc:UPI0001A848DF	RefSeq:XP_002455315.1	InterPro:bHLH_dom	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:8716965..8720882

Molecular Weight (calculated)

30542.9 Da

IEP (calculated)

6.400

GRAVY (calculated)

-0.374

Length

290 amino acids

Sequence
(BLAST)

001: MAQAASKRSA LLRPVMYEDE PSSMSLELFS HGIVVDGDEA DGGSAAAALS LHLAFDDDNF KGGCDASADY YSSWAAYDGS GATSSSSSSV LSFEQAGSGG
101: QHHLAYGEDG CAFWMDPAAG MVEHPAQQQR RSGCNFGLIV SPGSSPDDAG LHIQEPGAVQ LPAKPPHKRA RRDGEVQAAA AKKQCGGGAR KSKAKAAPAP
201: TKDPQSVAAK VRREKIAEKL KVLQDLVPNG TKVDLVTMLE KAITYVKFLQ LQVKVLAADE FWPAQGGKAP ELSQVKDALD AILSSQQYPK

Best Arabidopsis Sequence Match ( AT5G37800.1 )
(BLAST)

001: MSLINEHCNE RNYISTPNSS EDLSSPQNCG LDEGASASSS STINSDHQNN QGFVFYPSGE TIEDHNSLMD FNASSFFTFD NHRSLISPVT NGGAFPVVDG
101: NMSYSYDGWS HHQVDSISPR VIKTPNSFET TSSFGLTSNS MSKPATNHGN GDWLYSGSTI VNIGSRHEST SPKLAGNKRP FTGENTQLSK KPSSGTNGKI
201: KPKATTSPKD PQSLAAKNRR ERISERLKVL QELVPNGTKV DLVTMLEKAI GYVKFLQVQV KVLAADEFWP AQGGKAPDIS QVKEAIDAIL SSSQRDSNST
301: RETSIAE

Arabidopsis Description

BHLH86RSL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPA1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.