CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G234500.1	Wheat	nucleus	72.33	69.55
TraesCS4B01G080700.1	Wheat	nucleus	72.0	69.23
TraesCS4D01G079500.1	Wheat	nucleus	72.0	69.01
EES17296	Sorghum	nucleus	53.33	50.63
PGSC0003DMT400030165	Potato	nucleus	24.33	40.11
OQU83893	Sorghum	nucleus	29.67	36.78
EER93400	Sorghum	nucleus	34.33	35.27
KXG39918	Sorghum	nucleus	37.33	34.78
EER99632	Sorghum	nucleus	31.0	32.98
Solyc12g088380.1.1	Tomato	nucleus	30.0	32.49
PGSC0003DMT400055446	Potato	nucleus	36.33	30.19
Solyc04g077960.1.1	Tomato	nucleus	35.67	30.14
EES00435	Sorghum	nucleus	19.67	20.34
EES07381	Sorghum	nucleus	20.67	20.26
EES15124	Sorghum	nucleus	15.33	17.1
EER96848	Sorghum	nucleus	14.33	16.48
EES18589	Sorghum	nucleus	16.67	12.47
KXG33221	Sorghum	nucleus	16.33	11.72
EES14382	Sorghum	nucleus	13.33	11.49
OQU87789	Sorghum	cytosol	5.0	10.49
OQU87026	Sorghum	nucleus	13.0	8.46

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:8064490	UniProt:C5WSA8	EnsemblPlants:EER91225	ProteinID:EER91225
ProteinID:EER91225.1	GO:GO:0001046	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF47	SMART:SM00353	EnsemblPlantsGene:SORBI_3001G166700
SUPFAM:SSF47459	UniParc:UPI0001A821A6	RefSeq:XP_002464227.1	InterPro:bHLH_dom	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:13855125..13857226

Molecular Weight (calculated)

33254.8 Da

IEP (calculated)

5.220

GRAVY (calculated)

-0.622

Length

300 amino acids

Sequence
(BLAST)

001: MESGGVIAEP SWSLVDVPFQ AEESEIMEQL LGTFPSNGEE DHQEFPWPIQ ASNSFYFHCN ASASTYSSTS SNGSGSLSLI MPSEHGGYYL SDSCTAPLHL
101: NMVQNQGAAL FMDSILNPSY GSCDSSCDDL GDSSMNLLDS IGTSDKRKHL EQGKLDGHTR SRKYAKKSDS KRAKKIMQRE DGQSLSSCTF ENDSNASQGR
201: PVSDNLGGKA KADRRSATES QSLYARKRRE RINERLRILQ NLVPNGTKVD ISTMLEEAVE YVKFLQLQIK LLSSDEMWMY APIAYNGMNI GIDLNLSQRR

Best Arabidopsis Sequence Match ( AT2G14760.1 )
(BLAST)

001: MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLTAYHHQ GSQWNGGFCF SQESSSYSGY CAAMPRQEED NNGMEDATIN TNLYLVGEET
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR

Arabidopsis Description

Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IGG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.