Factsheet for Os01t0831000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042989_P001	Maize	nucleus, plastid	63.72	64.93
Zm00001d042988_P001	Maize	nucleus, plastid	63.72	64.93
TraesCS3D01G344600.1	Wheat	nucleus	60.0	60.56
TraesCS3A01G350600.1	Wheat	nucleus	59.07	59.91
TraesCS3B01G383000.1	Wheat	nucleus	58.6	59.43
HORVU3Hr1G087710.1	Barley	nucleus	57.21	58.57
OQU87789	Sorghum	cytosol	37.21	55.94
Solyc09g005070.1.1	Tomato	nucleus	28.84	41.89
VIT_08s0058g00110.t01	Wine grape	plastid	30.7	40.99
KRH00301	Soybean	nucleus, plastid	33.02	40.34
KRH49427	Soybean	nucleus, plastid	32.09	39.2
KRH75991	Soybean	nucleus, plastid	29.3	35.39
KRH65648	Soybean	nucleus, plastid	29.77	35.16
GSMUA_Achr4P18820_001	Banana	nucleus	33.49	35.12
AT5G01305.1	Thale cress	nucleus, plastid	26.51	33.33
Bra028895.1-P	Field mustard	nucleus, plastid	25.58	31.07
CDY66929	Canola	nucleus, plastid	25.58	31.07
CDY55900	Canola	nucleus, plastid	25.58	31.07
Os09t0455300-01	Rice	nucleus	23.26	21.19
Os08t0108500-01	Rice	nucleus	25.12	17.65
Os01t0111500-01	Rice	nucleus	18.14	13.22
Os02t0710300-01	Rice	nucleus	17.67	12.67
Os07t0588400-00	Rice	nucleus	16.74	12.2
Os12t0589000-00	Rice	nucleus	17.21	12.17
Os06t0496400-01	Rice	nucleus	15.35	11.22
Os01t0707500-01	Rice	nucleus	19.53	10.69
Os05t0541400-00	Rice	nucleus	20.47	10.58
Os03t0205300-00	Rice	nucleus	15.81	9.97
Os11t0634700-00	Rice	extracellular	15.81	9.47
Os01t0566800-00	Rice	nucleus	20.0	9.23

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:4327431	EMBL:AB115668	ProteinID:BAD81850.1	ProteinID:BAF06613.1
ProteinID:BAS75054.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653
GO:GO:0009987	GO:GO:0045893	GO:GO:0046983	GO:GO:2000032	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	EMBL:JN210896	EnsemblPlantsGene:Os01g0831000	EnsemblPlants:Os01t0831000-01	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF167	UniProt:Q7XAQ6	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00001B6107
RefSeq:XP_015618581.1	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

LAX PANICLE 1Basic helix-loop-helix (bHLH) transcription factor, Axillary meristem formation (Os01t0831000-01)

Coordinates

chr1:+:35558148..35559225

Molecular Weight (calculated)

23093.4 Da

IEP (calculated)

6.622

GRAVY (calculated)

-0.447

Length

215 amino acids

Sequence
(BLAST)

001: MHDPRGFPIH PQPYHLHPTA GGLGEGRMRG GGRRRPGAKL STDPQSVAAR ERRHRISDRF RVLRSLVPGG SKMDTVSMLE QAIHYVKFLK AQVTLHQAAL
101: VQHEEGCQHA DVAAAFSAAD ADLALELNHR HGGAGDDDAG MTTLEMAPMQ EAVGYGDGPA HQMMQQALDP AGQLMMGGAH QLPPLPCCVF VQETDPSCYS
201: VCNVHGEESG AQGSY

Best Arabidopsis Sequence Match ( AT5G01305.1 )
(BLAST)

001: MDDFNLRSEN PNSSSTTSSS SSSFHRHKSE TGNTKRSRST STLSTDPQSV AARDRRHRIS DRFKILQSMV PGGAKMDTVS MLDEAISYVK FLKAQIWYHQ
101: NMLLFINDHE TTSSCTYSPG AGEFGPKLFG YDDDYAPIMD TYSQGVPLTV ADSKYTPWFG SVDDEQERDS S

Arabidopsis Description

Transcription factor bHLH140-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BD33]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.