Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d011187_P001 | Maize | nucleus | 62.45 | 67.67 |
| OQU87026 | Sorghum | nucleus | 62.45 | 63.12 |
| TraesCS3A01G207300.2 | Wheat | extracellular | 60.52 | 60.39 |
| TraesCS3B01G233700.2 | Wheat | extracellular, mitochondrion, nucleus, plastid | 60.73 | 60.34 |
| TraesCS3D01G208500.2 | Wheat | mitochondrion | 61.37 | 60.34 |
| Zm00001d044242_P001 | Maize | nucleus | 61.59 | 59.67 |
| HORVU3Hr1G048770.1 | Barley | plastid | 59.44 | 57.47 |
| GSMUA_Achr1P14400_001 | Banana | nucleus | 18.67 | 52.1 |
| GSMUA_AchrUn_... | Banana | nucleus | 22.32 | 38.1 |
| Os01t0707500-01 | Rice | nucleus | 28.54 | 33.84 |
| Os05t0541400-00 | Rice | nucleus | 29.18 | 32.69 |
| CDY51449 | Canola | nucleus | 22.75 | 31.93 |
| Bra031275.1-P | Field mustard | nucleus | 22.75 | 31.93 |
| PGSC0003DMT400006453 | Potato | nucleus | 26.39 | 31.87 |
| Solyc03g121240.1.1 | Tomato | nucleus | 25.97 | 31.84 |
| CDY62045 | Canola | nucleus | 22.75 | 31.64 |
| Bra001826.1-P | Field mustard | nucleus | 21.89 | 31.48 |
| CDY32423 | Canola | nucleus | 22.1 | 31.21 |
| Os09t0455300-01 | Rice | nucleus | 15.24 | 30.08 |
| CDY48884 | Canola | nucleus | 21.46 | 29.85 |
| AT3G21330.1 | Thale cress | nucleus | 22.53 | 28.15 |
| KRH47179 | Soybean | nucleus | 25.54 | 27.61 |
| KRH23349 | Soybean | nucleus | 26.39 | 27.33 |
| KRH44227 | Soybean | nucleus | 25.75 | 27.09 |
| KRH09982 | Soybean | nucleus | 25.54 | 26.74 |
| VIT_09s0002g02700.t01 | Wine grape | nucleus | 25.32 | 25.05 |
| Os08t0108500-01 | Rice | nucleus | 16.09 | 24.51 |
| Os01t0831000-01 | Rice | nucleus | 9.23 | 20.0 |
| Os02t0710300-01 | Rice | nucleus | 10.52 | 16.33 |
| Os03t0205300-00 | Rice | nucleus | 11.59 | 15.84 |
| Os12t0589000-00 | Rice | nucleus | 10.3 | 15.79 |
| Os07t0588400-00 | Rice | nucleus | 9.66 | 15.25 |
| Os01t0111500-01 | Rice | nucleus | 9.44 | 14.92 |
| Os06t0496400-01 | Rice | nucleus | 8.8 | 13.95 |
| Os11t0634700-00 | Rice | extracellular | 10.52 | 13.65 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:4327934 | UniProt:A0A0P0V4E3 | ProteinID:BAS72758.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlantsGene:Os01g0566800 |
| EnsemblPlants:Os01t0566800-00 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF303 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0001C7E509 | RefSeq:XP_015629736.1 | RefSeq:XP_015629741.1 | InterPro:bHLH_dom | SEG:seg |
Description
basic helix-loop-helix protein 117Hypothetical conserved gene. (Os01t0566800-00)
Coordinates
chr1:-:21687799..21689199
Molecular Weight (calculated)
47183.5 Da
IEP (calculated)
5.151
GRAVY (calculated)
-0.224
Length
466 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRGFNEMIL SESVWNGGGG GGDGDGGAVV LPPEVGGVNA VDGSGMTMLE RLVLDEALAA AILELQGIQA PGCGGGGGKV AVVPPPTAGD GGVEAAVAFA
101: AMATGTPAYA DVDADVLQRQ RQHHHRHQGA MGMAAEYDVA PATPAVTLSA VPPPPPPPAF ATAAASVDGG GAMDATVFSG IGNDDVVDAV SATVAMTTAT
201: ATTSQCERVR GGGGGGGCGR KQRRPGRKRK AAEPTAAAAA ADMSSQDNPL CSLLASNTAG ADGGIQIAFS TSAPASKRAK PSLSSSSSSI SFDGRGPGGN
301: CGGGGGDDPL YEPDTEALAQ VKEMIYRAAA MRPVTLGAED AGERPRRRNV RISSDPQTVA ARQRRERISE RLRVLQKLVP GGAKMDTASM LDEAANYLRF
401: LKSQIRELQT LDRRNYPNAA MSINTAAATT MATSSSPTYN NSNAAMPAFA FPETLGCGGG GVEQLI
101: AMATGTPAYA DVDADVLQRQ RQHHHRHQGA MGMAAEYDVA PATPAVTLSA VPPPPPPPAF ATAAASVDGG GAMDATVFSG IGNDDVVDAV SATVAMTTAT
201: ATTSQCERVR GGGGGGGCGR KQRRPGRKRK AAEPTAAAAA ADMSSQDNPL CSLLASNTAG ADGGIQIAFS TSAPASKRAK PSLSSSSSSI SFDGRGPGGN
301: CGGGGGDDPL YEPDTEALAQ VKEMIYRAAA MRPVTLGAED AGERPRRRNV RISSDPQTVA ARQRRERISE RLRVLQKLVP GGAKMDTASM LDEAANYLRF
401: LKSQIRELQT LDRRNYPNAA MSINTAAATT MATSSSPTYN NSNAAMPAFA FPETLGCGGG GVEQLI
001: MEGLESVYAQ AMYGMTRESK IMEHQGSDLI WGGNELMARE LCSSSSYHHQ LINPNLSSCF MSDLGVLGEI QQQQHVGNRA SSIDPSSLDC LLSATSNSNN
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
Arabidopsis Description
BHLH87Transcription factor bHLH87 [Source:UniProtKB/Swiss-Prot;Acc:Q8S3D2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.